Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01943 ATGGGAGCACTTGCCCCTATCGCGCCTTGGAGCCCTGAAGATGATATTCTGCTCAAGAACGCCGTCGAGGCGAGTGCTTCCTTGGAGGCCCTTGCCAAAGGTGCTGTGCAGTTTTCTCGAAGATACACAGTAAGAGAATTGCAAGAACGATGGCATTCTTTACTTTATGATCCAATTGTATCTGAAGATGCATCTATGTCCATGATTGATGTTGAGCGTTCTTCTTCCATTCTTCCATCAAAGTTCAACAAGTTTGGGAATTCAAAAGAAAATAAATGTATTGGTGGGAAGAGGAAATCTGGCAGTGTGCGGCATTGCTATTATGCTTTGCGTAAAAGAATTTGCAATGAACCCTTTAATCCTATGGGCCCGAGTTATCTTGTTGGTGATAGTGACTATGTCACTGAAGAGCCTATGTCAGGAAATTGCATCCCTCCAACATCAGATGATTTTGGTCTTCAGAGCTCAGAGCTGGGCACCTTGCCCTGTAATTTTTCCCAAAATGCGATGAATAATGACGATACTGAGCACACTTTTCATTCTGGATGTCAACATACTGTTGAGCATTTTCCTCAGAACCTGGATAATGGACATGAGGGAATTTCTCACGTTATGGTAGATAATCTGCCTTTCGCCAATGAATCTCATGCTAAGGAATTGGCTCCATCAGCTAGCTTTCCAGTCCATAACCTCTTTGAAAATGATTTGGAGGCGGGACCTTCTACGTTTGGGCAACTGAGCACTGATCAGAGAGTGATGGGCTCTGAACCAGAAGACAACGATGTCTTCAATTCTCCTGTTTCTGATTCTGGTGCATCTTTTCATAATGTCGAGTACTCATCTCCTCTTCCTGGCATGCCAATATGGAGAGATGCTTCGTCAGCCTTGCCAATTGATGTTGGCTTTGCAGATAAGGATGTGCCTACAGGAGACTCTTTTGAACTCCCTGATGATGATGGGAACAACAACATTCAAAATGCAAGATTAGCGGGCTATGAGGCTCACTCTAACTCAAAGTTGAAGATTGAAGTGCAGCATGATCATTTGAAAAGTCCAAATGCCACTGCTGAAGGTTGTTATTTAGTGGAACTGTCCAATACTGTTTTGAACACGAGCAATGAGGATGAACTGTTTTTCATGGATGTTGATGGGCTGTCACTTTTGTTGAGTTCACCAAATGAAGTCAATCACGATCAAACAGGCAATGCAATTTATTCAGAAACAGTGTTACCAACGGATACAATGTTAGATCCCCCCTCTGCATGTTCTGGAGAGTTGTATGAAAAGGGATCCCACTGTAGCGATGGACATTTGGATTGTAGTTCAGAAGCTCATCCATCACCATCTACATCTTTGAACAGTCAATGTCCTGGAAAAATTGATGAACCTCTTTTCTGTACTTTGAACACAGAAGATCCAGAAATCCCTAGCAATGACGATGTTTTTCTACCTCCATTGTCAACAATTGCTACTATGGGATACCATTTTAATGATTGCATGGGTCCTACTTTTTCATCTACTAGTGATTTCTCTTGTAAAGAAAACTCTGGTGAAATGACTCAAAACCTTGTGCAAAGGGAGAGGAAAAATCATGATGGACAACCTCATGTTTCAACCATATCAATGGGATTGCATTGTTTGCCTGAAAGAGGTGAAAAACATCTGATTAGTGGAGATGGTGTTAATTTAAAATTATCCCATAGCAACTCCATACACGTGCCATCTGCAAATAAAACCAGCTCCATAAATGTAAATGACGATACCATCCTACCTGTCACTCTCATGGAAGAGAACAATGAAATTTCCCTGGAACCAAATACATCGACTTCAGTGAAAGATCATCGATTATCACGAGAAGTGGGTGTTCAAGGTGTTTTCGGTGTAGAACAAGATGGAATGTATTCGACATCTGATCATGAAGAGTTATTTATTGATAGTGAAGATGATTTACCTCATTTTTCAGATATTGAGGCTATGATACTTGATATGGACTTGGATCCAGAAGATCAAGATCTGTATCCAAATGAAGAAGTCTTAAAATATCAACATATAGACACCAGGAAGAGAATCATCAGACTGGAGCAAGGGATTAATGCTTGTATGCAAAGATCTATTGCCTCTCATGGGGCATTAGCAGTTCTTTGTGGCCGACATTCGAAGCATTACATTAAGAAATCAGAGGTTCTGCTGGGTAGAGCAACTGCAGAATTCATTGTAGACATTGACTTGGGAAGTGAGGGAAGCGGTAACAAAATATCTCGACGGCAGGCAATTATAAAAATAGATCAGGATGGATTTTTCTCCCTGAAGAATCTTGGCAAGTGCTCAATCTCCATAAATAACAAGGATGTGGCCCCTGGTCACTGCCTGCGACTTAATTCTGGTTGCTTGATTGAGATTAGGGGAATGGCATTTATATTTGAGTCAAACCCAGTTCGTATGAAGCAGTATGTAGATAACGTAGGCAAGACATCTCACAAACAGGAGTATCAATCATAA 2499 41.18 MGALAPIAPWSPEDDILLKNAVEASASLEALAKGAVQFSRRYTVRELQERWHSLLYDPIVSEDASMSMIDVERSSSILPSKFNKFGNSKENKCIGGKRKSGSVRHCYYALRKRICNEPFNPMGPSYLVGDSDYVTEEPMSGNCIPPTSDDFGLQSSELGTLPCNFSQNAMNNDDTEHTFHSGCQHTVEHFPQNLDNGHEGISHVMVDNLPFANESHAKELAPSASFPVHNLFENDLEAGPSTFGQLSTDQRVMGSEPEDNDVFNSPVSDSGASFHNVEYSSPLPGMPIWRDASSALPIDVGFADKDVPTGDSFELPDDDGNNNIQNARLAGYEAHSNSKLKIEVQHDHLKSPNATAEGCYLVELSNTVLNTSNEDELFFMDVDGLSLLLSSPNEVNHDQTGNAIYSETVLPTDTMLDPPSACSGELYEKGSHCSDGHLDCSSEAHPSPSTSLNSQCPGKIDEPLFCTLNTEDPEIPSNDDVFLPPLSTIATMGYHFNDCMGPTFSSTSDFSCKENSGEMTQNLVQRERKNHDGQPHVSTISMGLHCLPERGEKHLISGDGVNLKLSHSNSIHVPSANKTSSINVNDDTILPVTLMEENNEISLEPNTSTSVKDHRLSREVGVQGVFGVEQDGMYSTSDHEELFIDSEDDLPHFSDIEAMILDMDLDPEDQDLYPNEEVLKYQHIDTRKRIIRLEQGINACMQRSIASHGALAVLCGRHSKHYIKKSEVLLGRATAEFIVDIDLGSEGSGNKISRRQAIIKIDQDGFFSLKNLGKCSISINNKDVAPGHCLRLNSGCLIEIRGMAFIFESNPVRMKQYVDNVGKTSHKQEYQS 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12597320 12602986 + CmaCh01G019430.1 Cma01g01943 287636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01943 832 Gene3D - 710 818 - -
Cma01g01943 832 SMART FHA_2 727 784 IPR000253 GO:0005515
Cma01g01943 832 PANTHER MICROSPHERULE PROTEIN 1 1 828 IPR037912 GO:0002151|GO:0031011|GO:0071339
Cma01g01943 832 SUPERFAMILY SMAD/FHA domain 714 812 IPR008984 GO:0005515
Cma01g01943 832 Pfam FHA domain 729 800 IPR000253 GO:0005515
Cma01g01943 832 Pfam N-terminal region of micro-spherule protein 10 72 IPR025999 -
Cma01g01943 832 ProSiteProfiles Forkhead-associated (FHA) domain profile. 728 784 IPR000253 GO:0005515
Cma01g01943 832 CDD FHA 724 809 IPR000253 GO:0005515
Cma01g01943 832 PANTHER FHA DOMAIN PROTEIN 1 828 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01943 - - - cmax:111480451 1685.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01943 Cma-Chr1:12597320 Cma19g00285 Cma-Chr19:2151439 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1039 . . Bda01g00507 . Bpe02g00366 . . Bma01g02347 . . Cma01g01943 . Car01g01518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g02005 . . . . . . Cpe02g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001875 2 6 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 11 13 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01943 Cma_Chr01 FPKM 4.628652 4.505345 4.310122 5.39056 12.459048 13.688826 11.383782 6.729845 6.707627 6.916017