Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01945 ATGAAGATTCAGTGCGACGTCTGCAGCAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGACGCCGCCCTCTGCTCCACCTGCGACCACCGCGTCCACCACGCCAACGTCCTCGCCTCCAAGCACCTCCGCTTCCCCCTCCTCCATCCCAACAACAACAATTTCCCACTCTGCGACATCTGCCAGGAGAGACGAGCGTTCCTATTCTGTCAGCAGGACCGGGCGATTCTGTGCAAAGACTGCGACCTTCCAATCCATTCGGTAAATGAGCTTACCCAGAAGCACGATCGGTTCCTTCTTACCGGCGTGAAGCTCTCTTGTGAGTCTTCCGGGAATGTGCCGTCGTCTTCCTCTATGTCCGAGAAGATGGCTAATGCTTCTTCTGCCCCTGTTTCGAATTCGCCTTCAATTGCCGAGAGTTCAACTTCTAACGCCCAGACAGTGGGTGCGTCCACCGATGGTTGTGAGGCGATGAATGGTGTGGAGTATTTTATTGACGCGATTTCTGGGTGGCATTTTGATGAATTTCTTGATTCTTCCTCTACCGATGCTCCTCCTTTTGGTTTCTGTAAGCTGCAGAGCGATGAGGTTGATGGTGATTGGGTTTTTCTATTTGTTGATGATTTAGTTGAATTAGAAACGAGCGCGGATTCTTTCTCGTCGGAGGATTGGGGAATTTGGAGCCCTGAGGAGGAGGCTGCCGTACCTCTGTTTTGTTCAGAGATTGAGATGGAGGAAGGGAAGAAAGGTAGAACCTTGAAAGAGAAAACCAGAGGAGGAGGAGGTGGTGGTGGCGGTGACGGTGGGATTTCGGTGCCGGAGGTTGATCTCCGGCCGAGAAGATTCAGATTCTCTTGA 858 52.45 MKIQCDVCSKDEALLFCTADDAALCSTCDHRVHHANVLASKHLRFPLLHPNNNNFPLCDICQERRAFLFCQQDRAILCKDCDLPIHSVNELTQKHDRFLLTGVKLSCESSGNVPSSSSMSEKMANASSAPVSNSPSIAESSTSNAQTVGASTDGCEAMNGVEYFIDAISGWHFDEFLDSSSTDAPPFGFCKLQSDEVDGDWVFLFVDDLVELETSADSFSSEDWGIWSPEEEAAVPLFCSEIEMEEGKKGRTLKEKTRGGGGGGGGDGGISVPEVDLRPRRFRFS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12606514 12607547 + CmaCh01G019450.1 Cma01g01945 287638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01945 285 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Cma01g01945 285 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 243 - -
Cma01g01945 285 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cma01g01945 285 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma01g01945 285 CDD Bbox1_BBX-like 57 100 - -
Cma01g01945 285 MobiDBLite consensus disorder prediction 111 151 - -
Cma01g01945 285 MobiDBLite consensus disorder prediction 248 285 - -
Cma01g01945 285 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cma01g01945 285 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma01g01945 285 Gene3D Classic Zinc Finger 1 96 - -
Cma01g01945 285 CDD Bbox1_BBX-like 5 47 - -
Cma01g01945 285 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 243 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01945 Cma12g00429 CCT
Cma01g01945 Cma05g00283 CCT
Cma01g01945 Cma12g00429 ECH
Cma01g01945 Cma05g00283 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01945 Cma-Chr1:12606514 Cma11g01083 Cma-Chr11:5944389 1.02E-51 dispersed
Cma01g01945 Cma-Chr1:12606514 Cma12g00429 Cma-Chr12:2230092 4.37E-59 wgd
Cma01g01945 Cma-Chr1:12606514 Cma20g00817 Cma-Chr20:3862961 6.52E-45 wgd
Cma01g01945 Cma-Chr1:12606514 Cma05g00283 Cma-Chr5:1210628 3.57E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34383 PF00643 zf-B_box 5.60E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01945 - - mcha:111007828 310.457