Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01947 ATGGGGAAGAAGAAGTTCTTCGACAAGAAGAAATCCGCAACTTTCCAATTACTTGCGCGTGACTCATCCGATCCCAATTACGATGGAACTGCCGCCACCGACCGTGTTTTTGTTCGTGTCGACAACCACTCTTATACTCTCCCTGTCTTCGACGATGGTCCTGTCGATGCTTCCGGTTCTGCCTCCTTTGAGGAAAACCCTAACTCGATCTTTGCCGATGCTCCTGACGATTACGACGATGAAGAGAACGGAGGTTTTGGAGCTTCCAGGCGGTCTCGTGGGGAACTTGGTGGACCTGCGTCGTTACCGGAAAATGTTAGAAGGGAAATTCTCGAGCTGGGTTTTCCTGACGATGGTTATAATTATTTGCTGCATCTTCGGGATATTAAGAATACTGGTGGTGGTTCGGCGTTTTATAATAACCCCAAGGCCAAGCTGAATCAGCTTCCACGCGATGAGAAGGCGTATGATGCCACCGGAGTGATTGTTTCTCAAGGAACCAGTGATGCCGGTGAGAACATCATGTACAAAGTTGCATCCAAGACTGTTGGAGTCAAGGTTCAAAATGCTATTGACCCAGAAATAGCTGCACTGCTTGATGACGATGATTTATCGCGATTTGGTTCTGATGTTGAGGATTTGGAGGAGGATTTCGTAGTTCAGGCAAATTTATGTGAAGAAGGGGAGGCTGGTTCAACGGTTAATAAGTTTAGTGTGGCTGAGGATTCTGAGAGAGCGACAGGAAGCCAGAATATTATTAATAACAAATCTTTTGGTGACAACATTTTTGAGGATGCAGACGTTGACCATGTGGAAGATGATGTTGATAAGCCACGAACGCGTCGGCTTTTGGATGATCAATTTGACACCCTCTTAAGCCGGGACTATGCATCTGGTGACGACGGTGGCATTGATTGTGATGAGCATGATGATTGGGTAGCTGAAGAACATGAGTCCCTTGCTCAGAAGCTCAAGCATGCCCTTGGTGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTCCTGCGGATATATTGAGTGGTAAAGAAGGATCAGCAGATCAAGAGCTTTTGCAGTCTGCCAGTGATGTAATTCACCGATGTATGGAGTACGCTGAGAAATATCAAAATGAAGATGATGACATTGAAGATGAATACACATTTGAGGAGAGCAGTGATGAATCAGAAGTTTGGGACTGTGAAACTATTGTTTCTACATGTTCTAATCTCAATAACCATCCTGGAAAGATTGTAGCTCCTGAAATAACCAGAAGGAAGAAGTTGGCTGAAACTGTCTCTGGAGCCCTTAATTCTAAAAATTCTATGATAACTCTCAAGGGGAAAGAGAAGCTACCAGTGGACTTTCTACCTCATGGTCGAAAAGTTGTTGACAAAGTGAAAGATAATGGCAGCTTGAAAACTGAACAACAGAAGAGAAAGCTGCACGGTCAGGAGTCCAAGGAAGAGAAGAAGGAGAGGAAGGCTGCTGTCAAGGAAGCACGACGTGAAGCACGGCGCACAAAAAAAGAATTGAAGGAACTTTACACGGGGGAAACTCATCGTGCTCAGAAAGTAGTTGCTGTTTCTGGTCCAGCATCTATTCATCTTATCTGTTCACTTACATTCTATGTGAGGGAGAGCTTCTTGATGCTACATAATTGGACATATTTTCATTGTGACAAAGATGGAAGTACTGGGGAGAAGTTCTTGAAACAATTCTATATGGAACGAAGTACAGCCCATGATCTATATGCTTGGAGAAGGGAGAGAAGACAAGAAATGGGACAATCTGTTCAATGA 1809 44.22 MGKKKFFDKKKSATFQLLARDSSDPNYDGTAATDRVFVRVDNHSYTLPVFDDGPVDASGSASFEENPNSIFADAPDDYDDEENGGFGASRRSRGELGGPASLPENVRREILELGFPDDGYNYLLHLRDIKNTGGGSAFYNNPKAKLNQLPRDEKAYDATGVIVSQGTSDAGENIMYKVASKTVGVKVQNAIDPEIAALLDDDDLSRFGSDVEDLEEDFVVQANLCEEGEAGSTVNKFSVAEDSERATGSQNIINNKSFGDNIFEDADVDHVEDDVDKPRTRRLLDDQFDTLLSRDYASGDDGGIDCDEHDDWVAEEHESLAQKLKHALGDHSKDDLDLDQGYKAPADILSGKEGSADQELLQSASDVIHRCMEYAEKYQNEDDDIEDEYTFEESSDESEVWDCETIVSTCSNLNNHPGKIVAPEITRRKKLAETVSGALNSKNSMITLKGKEKLPVDFLPHGRKVVDKVKDNGSLKTEQQKRKLHGQESKEEKKERKAAVKEARREARRTKKELKELYTGETHRAQKVVAVSGPASIHLICSLTFYVRESFLMLHNWTYFHCDKDGSTGEKFLKQFYMERSTAHDLYAWRRERRQEMGQSVQ 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12609595 12614071 + CmaCh01G019470.1 Cma01g01947 287640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01947 602 Coils Coil 486 520 - -
Cma01g01947 602 MobiDBLite consensus disorder prediction 56 101 - -
Cma01g01947 602 MobiDBLite consensus disorder prediction 470 506 - -
Cma01g01947 602 Pfam Low temperature viability protein 8 286 IPR007307 GO:0042274
Cma01g01947 602 PANTHER LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED 1 540 IPR007307 GO:0042274
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01947 K14798 LTV1; protein LTV1 - csv:101207600 824.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01947 Cma-Chr1:12609595 Cma14g01868 Cma-Chr14:13245485 1.47E-09 dispersed
Cma16g00216 Cma-Chr16:983551 Cma01g01947 Cma-Chr1:12609595 1.19E-35 transposed
Cma01g01947 Cma-Chr1:12609595 Cma09g00124 Cma-Chr9:536518 2.73E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1044 . Blo12g00897 . . . Bpe04g00230 Bma04g00226 . . . Cma01g01947 . Car01g01521 . . . . . . . . . . . . . . . . . . . . Cone17ag1380 Cone20ag0103 Lsi04g01717 . . . . . . . . . . . . . . . . . . . Cpe02g00092 . . . . . . . Cla05g01899 Cam05g2035 Cec05g2043 Cco05g2099 Clacu05g2027 Cmu05g1907 Cre05g2029 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004778 0 1 1 1 1 1 1 1 1 1 1 1 1 4 2 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01947 Cma_Chr01 FPKM 15.508904 14.058817 19.54244 19.118635 20.429289 21.812334 22.93874 36.667713 36.671558 35.855415