Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01953 ATGTCTTCGCTCGACGCCGGTTCCAAGGTCGAGGAGGTTAAGGACAAGGAAGACAAGGCAGGGGAGCTTTTGTTCTGTGGTGCTACCTGCTGGGATATCATTGGTCGGAAAAAAGGCTCTGTGGAAGGCAACTTGAGTTCTCCCACTCGCCTCCGCCCTCTCGTCGGAGTTGACATTCGTTTTGTTGCTTCTGGTTGCACATCGTGTCATTGTGTGGCATTGGACGTGGAAGGGCGTTGCTATACCTGGGGACGCAATGAGAAAGGTCAATTGGGTCATGGAGATTTGATTCAGCGAGATAGGCCTACAATAGTATCTGACCTTTCGAAGTATAAGGTGGTTAAAGCTGGAGCAGGGAGAAGCCACACAGTTGTGGTTATTGAGGATGGAAGTTCTCTATCTTTTGGTTGGAACAAACATGGCCAATTGGGTTCAGGTTCAGTGAAAAATGAGATTGAGTCGTCTCCTGTACGTTGTCTTGTATCTGAAGTGAAACATACTGCTTGTGGCGGCGATTTCACTGTGTGGTTATCTTCTATTGAAGGAGCTTCCATACTTACTGCAGGTCTTCCACAGTATGGACAGCTTGGTCATGGAACGGATAATGAGTACAACACAAAGGATAGCTCAGTCAGACTTGCTTATGAAGCCCAACCACGCCCCAGAGCTATTGCTTCTCTTGCTGGAGAAGAAATTGTTAAAGTTGCTTGTGGAACAAATCATACAGTGGCCGTGGATCGTAATGGCTTTGTTTACACGTGGGGCTTTGGTGGTTATGGAAGACTTGGGCATAGAGAGCAGAAGGATGAATGGGCCCCTCGACGCGTTGATGTATTCCAGAGGAAAAACACGCTTCCTCCTGATGCTATTGTTTCAGCAGGGTCTGTTAACTCTTCTTGTACTGCAGGTGGGGGGCAGCTATATATGTGGGGGAAAATAAAAAATGCAGGAGATGACTGGATGTATCCCAAACCTCTCATGGATTTAAGTGGTTGGAATATAAGGTGCATGGATTCGGGCGGCATGCACCATTTTGTGGGTGCCGATAACTCGTGCATAAGTTGGGGCCATGCACAATATGGAGAGCTGGGATATGGCCCAACAGGGCAGAAGTCTTCTGCTGTACCCAAGAAAGTCGACATCCTGGAGAACATGCATGTCGTAAGTGTTGCATGTGGTGTTGGACACTCGATGGTTATCGTTGATAGAGCTAATATGGCTGACCGACTTGATCAGCTTGATGTACACGATGGCAAAGCTTTTGATGAAGAGAATGCAGCATCGAATGCAGTACCACAGAATAAAGGTTCGGCGGTCAAGCAAACCCCGAAGGCTGCTAAAGCGTCGCAGAACGCGAAGAAGAGGAAAAAGGCTAAAGATTCATCTGAGTCAGAGGAGGAAGAGGAGGAAAATGAAGATGGCAGCAGCAGCGATGAAGATGAGGCGAATGGGCTGTCGGATTCAAGTGAACAATATGGGAGCAAAAGTAAGGGTAGAGGAAGACCAAAGGGTGGTAAAAACTCATCTGGCGGAGGAAAAGGCAGTGGCCGTGGACGGGGACGCCCCCCGTCAAACAAGAAATCAACGCCTTCTCAAGGAAAAGCGGGAGCAGTGAAATCAGCAACTCTGTTACACCAGACTATTCCTGCAATTTTGAGATTATTTCACCACCATTTGTTTTCAATGATATGCTTATCCAGAGATGATGTCACTTACTTACCTAATGACATTGATGATTCAGAACTTCACCTAAACAGAGCAGCACTCTCAGTACCTATCATCTTGGTTGTAAAACTGGAGGAAGTTTGTGCTGGGACCAATCTGAACAATCCAAGTTTGCTTCTAATGCAAGGAACGGAAGAGAGCGTGTCGGGTGATGGCTCAGATCCTCCGACCGCAGTATCTCTCGAGAGGAAGCCCCTGGGCCTTGTGGGAACGAAGTGGCTTAAACAGGGACATACGATGGTTCCTTGTGGGCGTAGTAATTTCAAAATCAAGGCCAGTTTTAGTACACTCTACAGTTTGAAGGATTCACATGATTCTTGGCAATCAACCCATGTGAGTGTGGCTCCACCAGACATCCCATGGTGGTGA 2094 47.47 MSSLDAGSKVEEVKDKEDKAGELLFCGATCWDIIGRKKGSVEGNLSSPTRLRPLVGVDIRFVASGCTSCHCVALDVEGRCYTWGRNEKGQLGHGDLIQRDRPTIVSDLSKYKVVKAGAGRSHTVVVIEDGSSLSFGWNKHGQLGSGSVKNEIESSPVRCLVSEVKHTACGGDFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPRAIASLAGEEIVKVACGTNHTVAVDRNGFVYTWGFGGYGRLGHREQKDEWAPRRVDVFQRKNTLPPDAIVSAGSVNSSCTAGGGQLYMWGKIKNAGDDWMYPKPLMDLSGWNIRCMDSGGMHHFVGADNSCISWGHAQYGELGYGPTGQKSSAVPKKVDILENMHVVSVACGVGHSMVIVDRANMADRLDQLDVHDGKAFDEENAASNAVPQNKGSAVKQTPKAAKASQNAKKRKKAKDSSESEEEEEENEDGSSSDEDEANGLSDSSEQYGSKSKGRGRPKGGKNSSGGGKGSGRGRGRPPSNKKSTPSQGKAGAVKSATLLHQTIPAILRLFHHHLFSMICLSRDDVTYLPNDIDDSELHLNRAALSVPIILVVKLEEVCAGTNLNNPSLLLMQGTEESVSGDGSDPPTAVSLERKPLGLVGTKWLKQGHTMVPCGRSNFKIKASFSTLYSLKDSHDSWQSTHVSVAPPDIPWW 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12632208 12637751 + CmaCh01G019530.1 Cma01g01953 287646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01953 697 MobiDBLite consensus disorder prediction 424 537 - -
Cma01g01953 697 PANTHER PROTEIN RCC2 10 532 IPR028641 -
Cma01g01953 697 Pfam Regulator of chromosome condensation (RCC1) repeat 354 400 IPR000408 -
Cma01g01953 697 Pfam Regulator of chromosome condensation (RCC1) repeat 77 126 IPR000408 -
Cma01g01953 697 Pfam Regulator of chromosome condensation (RCC1) repeat 186 245 IPR000408 -
Cma01g01953 697 Pfam Regulator of chromosome condensation (RCC1) repeat 248 286 IPR000408 -
Cma01g01953 697 Pfam Regulator of chromosome condensation (RCC1) repeat 129 175 IPR000408 -
Cma01g01953 697 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 116 126 IPR000408 -
Cma01g01953 697 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 304 IPR000408 -
Cma01g01953 697 Gene3D - 8 211 IPR009091 -
Cma01g01953 697 PRINTS Chromosome condensation regulator RCC1 signature 235 251 IPR000408 -
Cma01g01953 697 PRINTS Chromosome condensation regulator RCC1 signature 251 265 IPR000408 -
Cma01g01953 697 PRINTS Chromosome condensation regulator RCC1 signature 113 126 IPR000408 -
Cma01g01953 697 PRINTS Chromosome condensation regulator RCC1 signature 132 148 IPR000408 -
Cma01g01953 697 PRINTS Chromosome condensation regulator RCC1 signature 79 95 IPR000408 -
Cma01g01953 697 MobiDBLite consensus disorder prediction 522 536 - -
Cma01g01953 697 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 403 IPR000408 -
Cma01g01953 697 MobiDBLite consensus disorder prediction 464 485 - -
Cma01g01953 697 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Cma01g01953 697 MobiDBLite consensus disorder prediction 427 448 - -
Cma01g01953 697 Coils Coil 452 472 - -
Cma01g01953 697 Gene3D - 212 409 IPR009091 -
Cma01g01953 697 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 183 248 IPR000408 -
Cma01g01953 697 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 235 245 IPR000408 -
Cma01g01953 697 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 78 129 IPR000408 -
Cma01g01953 697 SUPERFAMILY RCC1/BLIP-II 19 403 IPR009091 -
Cma01g01953 697 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 130 180 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01953 - - - csv:101217767 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01953 Cma-Chr1:12632208 Cma07g01272 Cma-Chr7:7087477 3.49E-20 dispersed
Cma01g01953 Cma-Chr1:12632208 Cma04g02858 Cma-Chr4:19048127 3.79E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1063 . . Bda01g00500 . Bpe02g00362 . . Bma01g02357 . . Cma01g01953 . Car01g01525 . . . . . . . . . . . . . . . . . . . . Cone17ag1389 Cone20ag0092 Lsi04g01721 Csa03g04257 Chy04g00438 . . . . . . . . . . Cmo01g02012 . . . . . . Cpe02g00088 Bhi09g02117 Tan01g4990 . . Hepe01g1636 Mch11g0139 . . . . . . . . . . . Cme04g00492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01953 Cma_Chr01 FPKM 15.48257 15.953081 6.141568 6.640246 29.100607 29.552853 27.999842 5.409029 4.577616 4.146472