Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01954 ATGGGGAAGTCTACTTCTTGCTTTAAGATAATCGCGTGCGGTGGCGATTCTAGGGAGAAAGATGATAATCATATTTCTGAGAGTAAGCGTTTGAATGACAAGCAAGGCTGGAGTTTTCGAAAGAGATCGAGCCGGCAACGAGTGCTGAGTAACACTGTGATAGCTGAGATCCCTTCTCCTGGAAATAGAGAGAGCTTTAATAACTTCCAGCAACCAACCAATGGTTGTACATTAGAAAAAGATGCTGGTTTGCAGTGCGCAACCGAGAAACCTCAAATACCGAGTACTGAAAATCTTAAGGAATCTGAAGCTGTTGATGTCATTCAAAAGGAGAGTAAAGTTGATATTGAGCTGGAGGAACGCAGCGCTATTATCATCCAGAGTGTTATTAGAGGGCTGTTGGCCCGAAGAAAGCTTCTGATGCTGAAGAATGTGGTTAAGTTGCAAGCTGCTATCCGAGGGCACTTGGTTAGGAAACATGCCATTGAAACTCTTCGTTGTATTCAGGCCATTATCAAAATGCAAGCTCTTGTGCGTGCATGTTGTGCCCGTTCGGCAGTTGAACGATCACATACGAAGGATAGCCATAGTTATAAGACCTTGGAGAAGGAAAAGTTGAGAAAATCAAGTGGGACTTACGTTTCAATTGAGAAACTACTTAGCAATAGCTTCGTTCGGCAGCTGCTTGAGTCTACACCGACCACGAGACCTATCAACGTTAGTTACTGTTGTTCTAAATCTGAGACTACTTGGAAATGGTTGGAGAGATGGACATCTATCTCATCGGTCGATGTTCTGGAGTTAAAGGAAGCAGAGTTCATGACAGGAGAACAAGGAAAAGAGAAGGAAGAAAACGTTCACGCATCTGAAGCTAGTGCTGAGATTGACTCTAATGTTCTTTGCAAGTCAGCTGATTCAAGATCCAGCAATGAGGAATCAGTAGTGCATTCTGAAAGTGAAGATAACTTGATTACTTATGATATGGACAATACAGAGTTTCAGCCATGTCAGGTTACCTCTTCCATGTTGGAGAAGACATGGTTTGAGGACGCAGGTGTCTCAAATGTGAAAGAAACCTTGATGGAAGCAAATTCTCTCCCAGATCAGAGGATGCGATTGGTGGCAGATTCTCAGTTACAGTATAACCCTCATAAAGAGGATCTTGGAACCGAATTCCAGCAAAACAAAACATCGACTGGGACGTTTTCCTCAGATCAACTAGAGCTGAAGGAGAAAAAAACTATCTTTGGTTCAAGAAGGGCAAGTAACCCAGCATTCATTGCTGCCCAATCCAAATTTCAAGAGCTGAGTTCGATGGAAACTTCAGGTAGATCAATCAGTTCATCATATCAAGAAACCGGGGCCGAGTCTTGTATTGGTGCTATCTCATCTGCATCAGCTACTTCTCTAAAGACGGAGGAGGTGTCCACTACAGAGGACTTCATCACAAATGGACCCAGGACTATTCGAGCTGGTGGCTCTGAATGTGGGACCGAGCTTTCTATTACCTCTACTCTTGATTCACCTGATTTATCTGAAGCTGGTGCCTTTGAATATGAGCATGAAACCAATGTAACAGAGATATGTGTCCATGATCAGAGCAGCAATAAGAGCACAGAAATTGACGTGGGTAGTGCTCCCTCCAGTCAAGTGTCAAACTTATTTCAACCTGTTTTGTTGGGGTCTCCAGAAAAGCCTGGTGTTGTCGAATCCATCGATAAAATAACTGTGGACTCTGCTAAAAAAGAAGTTAAGCCAGATGTAAATGCATCAGTTCTGCAGGGAGAACAGGATATTGAAACAGGCAATTGTAGGCTATCCCCATCAGCCTCTCCAAGAAGCCATATTACTATTCTGGAATCCCAAGGAACACCTTCAAGTCAGGTCTCTACAAAATCTAATAAGAGAAAAATAGATATGAGCAGAAGCAATCCGAAGCGCAAGTCCCTCACTGCTGGTAAGAAATCACCCTCGAATCTTCATTGCAACGTTGACTCGCCCAATAACTCGGAACCTTTTCCTAAAGATAAGATTGAAAAGAGGCGCAATTCCTTTAGTTCAGCAAGACCTGATCATATTGAAGAAGAGTCGAGAGAAAGCAGTTCCAATCAATCTCTCCCTCATTTCATGCGAGCTACGGAATCTGCTAGAGCTAAGGTGCAGTTAAATAATTCTCCAAGATCCAGTCCAGATGTCCAAGATGAAGAAATCTACATCAAGAAGCGGCATTCCTTTCCTGTTGCCAATGGAAGGCAGGGGTCACCACGAATCCAACGAACAACGTCTCAAGCACAAAAGAGCGGAAAGGGAAATGAGAGGAAGTGGCAAAGATAG 2334 43.36 MGKSTSCFKIIACGGDSREKDDNHISESKRLNDKQGWSFRKRSSRQRVLSNTVIAEIPSPGNRESFNNFQQPTNGCTLEKDAGLQCATEKPQIPSTENLKESEAVDVIQKESKVDIELEERSAIIIQSVIRGLLARRKLLMLKNVVKLQAAIRGHLVRKHAIETLRCIQAIIKMQALVRACCARSAVERSHTKDSHSYKTLEKEKLRKSSGTYVSIEKLLSNSFVRQLLESTPTTRPINVSYCCSKSETTWKWLERWTSISSVDVLELKEAEFMTGEQGKEKEENVHASEASAEIDSNVLCKSADSRSSNEESVVHSESEDNLITYDMDNTEFQPCQVTSSMLEKTWFEDAGVSNVKETLMEANSLPDQRMRLVADSQLQYNPHKEDLGTEFQQNKTSTGTFSSDQLELKEKKTIFGSRRASNPAFIAAQSKFQELSSMETSGRSISSSYQETGAESCIGAISSASATSLKTEEVSTTEDFITNGPRTIRAGGSECGTELSITSTLDSPDLSEAGAFEYEHETNVTEICVHDQSSNKSTEIDVGSAPSSQVSNLFQPVLLGSPEKPGVVESIDKITVDSAKKEVKPDVNASVLQGEQDIETGNCRLSPSASPRSHITILESQGTPSSQVSTKSNKRKIDMSRSNPKRKSLTAGKKSPSNLHCNVDSPNNSEPFPKDKIEKRRNSFSSARPDHIEEESRESSSNQSLPHFMRATESARAKVQLNNSPRSSPDVQDEEIYIKKRHSFPVANGRQGSPRIQRTTSQAQKSGKGNERKWQR 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12639396 12642885 + CmaCh01G019540.1 Cma01g01954 287647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01954 777 Pfam IQ calmodulin-binding motif 143 160 IPR000048 GO:0005515
Cma01g01954 777 Pfam IQ calmodulin-binding motif 120 139 IPR000048 GO:0005515
Cma01g01954 777 MobiDBLite consensus disorder prediction 751 769 - -
Cma01g01954 777 Pfam Protein of unknown function (DUF4005) 690 769 IPR025064 -
Cma01g01954 777 ProSiteProfiles IQ motif profile. 141 170 IPR000048 GO:0005515
Cma01g01954 777 MobiDBLite consensus disorder prediction 672 701 - -
Cma01g01954 777 Gene3D - 117 167 - -
Cma01g01954 777 MobiDBLite consensus disorder prediction 717 731 - -
Cma01g01954 777 SMART iq_5 141 162 IPR000048 GO:0005515
Cma01g01954 777 SMART iq_5 166 188 IPR000048 GO:0005515
Cma01g01954 777 SMART iq_5 118 140 IPR000048 GO:0005515
Cma01g01954 777 PANTHER IQ-DOMAIN 5-RELATED 1 772 - -
Cma01g01954 777 PANTHER PROTEIN IQ-DOMAIN 32 1 772 - -
Cma01g01954 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 185 IPR027417 -
Cma01g01954 777 MobiDBLite consensus disorder prediction 16 38 - -
Cma01g01954 777 MobiDBLite consensus disorder prediction 618 634 - -
Cma01g01954 777 MobiDBLite consensus disorder prediction 645 670 - -
Cma01g01954 777 MobiDBLite consensus disorder prediction 618 777 - -
Cma01g01954 777 ProSiteProfiles IQ motif profile. 119 147 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01954 - - - mcha:111009987 1169.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01954 Cma05g00294 CCT
Cma01g01954 Cma12g00418 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01954 Cma-Chr1:12639396 Cma09g00343 Cma-Chr9:1410126 7.41E-21 dispersed
Cma01g01954 Cma-Chr1:12639396 Cma12g00418 Cma-Chr12:2168275 6.28E-167 wgd
Cma01g01954 Cma-Chr1:12639396 Cma05g00294 Cma-Chr5:1268439 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1072 Blo01g01588 Blo12g00893 Bda01g00499 Bda03g00278 Bpe02g00361 Bpe04g00234 Bma04g00236 . Cmo05g00299 Cmo12g00368 Cma01g01954 . Car01g01526 Car12g00395 . . Cpe07g00375 Bhi04g00241 . . . Hepe10g0136 . . . . . . . . . Cone4ag1957 Cone7ag1870 Cone17ag1390 Cone20ag0091 Lsi04g01722 Csa03g04258 Chy04g00437 Cme03g01895 . . . . . . . . Sed11g1080 Cmo01g02013 . Cma12g00418 Cma05g00294 Car05g00243 . Cpe11g00244 Cpe02g00087 Bhi09g02116 Tan01g4991 Cmetu03g0968 . Hepe01g1635 Mch11g0138 . Cla05g01894 Cam05g2029 Cec05g2038 Cco05g2095 Clacu05g2020 Cmu05g1900 Cre05g2024 Lsi08g01337 Csa02g02119 Chy03g01398 Cme04g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002353 2 2 0 1 2 2 3 2 2 2 1 2 3 2 2 2 2 4 3 2 2 2 2 2 2 2 1 4 3 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01954 Cma_Chr01 FPKM 11.099885 12.495612 6.964909 7.019811 21.100935 19.69191 20.274458 4.800841 4.443444 4.065833