Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01959 ATGGGCTCTGTGGATGAGAAGCTCAAAACAATAGGGGGGTTCATTACTAACGCCCCACAGACTAACCTTCTCGACGACATGAAACTGTTGAAAGAAATGCAAGATCAAACTGGGGCCCGGAAGGCTATAAACTCCGAGCTATGGCACGCTTGTGCTGGTCCGCTTGTTTCCTTGCCCCATATGGGCAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCCAATCTTCCCTCTCAGTTGATGTGCCAAGTTCATAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTATGCTCAGATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCATAGTTCCGGACTTCGGACTACGGCCGAGTAAACATCCAAACGAGTTCTTCTGTAAAACTTTGACTGCCAGTGACACCAGCACACATGGTGGGTTTTCAGTGCCACGCAGAGCTGCTGAAAAGCTCTTTCCTCCATTGGATTACACAATGCAGCCACCAACTCAGGAACTCGTTGTCCGTGATTTGCACGACAATACCTGGACTTTTCGCCACATATACCGTGGGCAGCCGAAGCGACACCTTCTCACAACCGGATGGAGTCTATTCGTCGGGGCCAAGAGGCTTAGAGCTGGCGATTCTGTCCTTTTTATCAGGGATGAAAAGTCACAGTTGCTCGTTGGAGTGAGGCGTGCCAACCGGCAACAATCAACGTTGCCATCATCGGTTCTATCTGCTGATAGTATGCACATAGGGGTTCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGGAGTCCATTCACAATCTTCTACAACCCCAGAGCATGTCCTTCAGAGTTTGTTATTCCCTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTTGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATACATGGGAACAATTGTTGGAATTAGCGACTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTCCAGGTGGAGTGGGATGAGCCAGGGTGCTGCGACAAGCAGAACAGGGTTAGTTCATGGGACATAGAAACCCCAGAAAGTCTCTTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGCCCATTACACGGTGGGTTCTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATGTTTCATATGCGCCAACTTTATGCTCCGAACCACTGATGAAGATGCTACTGAGGCCTCAACTGGTTAACCTTCACGGCACCACTTTACAGCAGGACATGATGGGGGGTATGCAGCCAGTAACCAATCCCAAAATGCAGCAGCAGCAGGTTACATTGTCGTCTCCTCGGCATCAAAATCATCATCAGCCAGCTCCTTCGCCATCTACTGATCCCATTAACTCAAATTCATCACCTAAAGCAAATGAACCAGGAAAAGTACAGGATTCGGCGGCCATTGAAAGTGAAGCTCCAACTGGAGCTGAGGTAGATAAGTCCAAATATGAACGTGAACATTCAACCTGTCAGTCTAATCCATTGCCGCCGGTTGATTGTGGGGAGGATAAACTCACTGGTAATGAAGTGAATATGCAGACGCTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATCCCCATGCAGTTGCAATCCGTATCATCCTGGCCCTTGCAGCCTCAGCTGGAATCACTAATCCAACATCCCCAACCAATTGACATGCCTCAGCCTGAATTTCCCAATTCAAATGGTTTGATTTCATCCATGGATGGCGATGGATGCTTGATTAACCCTACTTGTCTACCTCTTTCTGGTGTAATGAGATCACCAGGGAATCTCTCTATGTTGGGATTGCAAGACTCCTCAACAGTGTTCTCTGAGGCTCTTAATTTTCCTATACCCTCTACAGGTCAAGAGATGTGGGATCCTCTTAGTAATATAAGGTTCTCTTCTCAAAACAATCACCTCGTCTCGTTCTCCCATCCCGATGCATCTAACCTGAACTGCATGGCTAATGCAAATGTTACGAGAGATGTTTCCGATGAGAGCAACAACCAGAGTGGGATATATTGTTGTTCTAACCTTGAAATCAGTAATGCTGGAAATACTTTGGTTGATCCTGCTGTTTCGAGTACCATTCTTGATGATTATTGCACACTCAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATCACCTCTGCCAGTTTGGGAGATTCTCAGGCTTTCTCCAGGCAAGAGTTCCATGATAATTCGGGTGGTACATCCTCTTGCAATGTGGATTTTGATGAAGGCAATCTTCTGCAGAATGGCTCGTGGAAACAAGTGGTACCGCCCATGAGGACTTACACCAAGGTCCAGAAGGCGGGATCAGTTGGTAGGTCTATTGATGTGACAAGTTTTAAGAACTACGAAGAACTGTGCTCTGCTATAGAGTGTATGTTTGGACTTGAAGGGTTGCTTAATGACCCAAGAGGCTCAGGATGGAAACTGGTTTATGTGGATTATGAGAACGACGTGCTGCTTATTGGCGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGCATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATGAATTGCTCCATATCAGAAGGTGGCCGAGCTTAA 2811 46.53 MGSVDEKLKTIGGFITNAPQTNLLDDMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHMGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVNSEKDVFIVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLVGVRRANRQQSTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWDIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENVSYAPTLCSEPLMKMLLRPQLVNLHGTTLQQDMMGGMQPVTNPKMQQQQVTLSSPRHQNHHQPAPSPSTDPINSNSSPKANEPGKVQDSAAIESEAPTGAEVDKSKYEREHSTCQSNPLPPVDCGEDKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSSWPLQPQLESLIQHPQPIDMPQPEFPNSNGLISSMDGDGCLINPTCLPLSGVMRSPGNLSMLGLQDSSTVFSEALNFPIPSTGQEMWDPLSNIRFSSQNNHLVSFSHPDASNLNCMANANVTRDVSDESNNQSGIYCCSNLEISNAGNTLVDPAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGNLLQNGSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYEELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGMNCSISEGGRA 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12653796 12658864 - CmaCh01G019590.1 Cma01g01959 287652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01959 936 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Cma01g01959 936 SUPERFAMILY CAD & PB1 domains 820 901 - -
Cma01g01959 936 PANTHER AUXIN RESPONSE FACTOR 5 30 926 - -
Cma01g01959 936 Gene3D - 819 911 - -
Cma01g01959 936 CDD B3_DNA 148 249 IPR003340 GO:0003677
Cma01g01959 936 Gene3D - 147 250 IPR015300 -
Cma01g01959 936 ProSiteProfiles PB1 domain profile. 822 906 IPR000270 GO:0005515
Cma01g01959 936 MobiDBLite consensus disorder prediction 455 505 - -
Cma01g01959 936 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 926 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma01g01959 936 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Cma01g01959 936 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma01g01959 936 Pfam AUX/IAA family 822 909 IPR033389 -
Cma01g01959 936 Gene3D - 313 385 - -
Cma01g01959 936 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Cma01g01959 936 SMART B3_2 149 251 IPR003340 GO:0003677
Cma01g01959 936 MobiDBLite consensus disorder prediction 455 545 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01959 Cma09g00118 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01959 Cma-Chr1:12653796 Cma05g00728 Cma-Chr5:4096173 8.89E-35 dispersed
Cma01g01959 Cma-Chr1:12653796 Cma09g00118 Cma-Chr9:517496 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34384 PF02362 B3 3.80E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01959 K14486 - csv:101216825 1717.21