Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01962 ATGACGGCTGGACTCGGAAAATGCAGCAAAATCCGGCACATTGTCAGGCTCCGACAAATGCTCCGACGGTGGCGCAACAAGGCACGAATGTCCGCCAATCGTATCCCCTCAGACGTACCCGCCGGACACGTGGCCGTCTGCGTTGGAACGAGCTGTCGACGGTTCGTCGTCCGGGCAACTTACTTGAACCACCCGGTTTTCAAGAAGCTTTTAGTCGAAGCAGAAGAGGAATTCGGGTTTAGCAATTCAGGCCCCTTGGCAATCCCTTGCGACGAATCGGTTTTCGAAGAAGTGATCCGGTTCATCTCTAGATCCGAGCCACCCAACTCGGGGCGGTTCGTGAAATTGGACGATTATCAGAGTTACTGCCACATCGGAATCAGAAGCAGAGTCGATATGTGGCCGGAATCTCGGCCTTTGCTTCATGGATTGGCCGAGAAATCCATCTGGTAA 453 53.64 MTAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVEAEEEFGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQSYCHIGIRSRVDMWPESRPLLHGLAEKSIW 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12666544 12666996 + CmaCh01G019620.1 Cma01g01962 287655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01962 150 PANTHER SMALL AUXIN-UP RNA-RELATED 6 143 - -
Cma01g01962 150 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 143 IPR003676 GO:0009733
Cma01g01962 150 Pfam Auxin responsive protein 16 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01589 Cma-Chr1:10971844 Cma01g01962 Cma-Chr1:12666544 3.46E-24 dispersed
Cma01g01962 Cma-Chr1:12666544 Cma19g00707 Cma-Chr19:7228844 4.66E-64 dispersed
Cma01g01962 Cma-Chr1:12666544 Cma01g01964 Cma-Chr1:12681845 4.00E-20 proximal
Cma01g01962 Cma-Chr1:12666544 Cma20g00800 Cma-Chr20:3759823 4.15E-54 wgd
Cma01g01962 Cma-Chr1:12666544 Cma09g00114 Cma-Chr9:506893 5.69E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01962 K14488 - csv:101216342 290.426