Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01969 ATGGCACACTCAACTTCCTTAGCAATAAACGCAGAGAAAAGCAGAAAAACGAAACCCATCAACACCGAACGCAGAAAAAAGCACCAAAACCCACCTCCCTCCCAACCGCCGCCGCCGCCCTCTGCCCAATCTTCATGGGACCAAATCAAGAACCTCATCACTTGCAAGCAGGTGGAGGCTACGAGAGTTCACGAGCCGGAAAAACGCCCGCCGGCGGCGAATTCGAAGTTGGGTTCTTCTTACAGCTCCATTTGTAGGTTTAGAGACGTGGTCCATGGCAACGCCAAAATTGTTCACAGACCCGACAACTCACCGGAAACCAGCTCCCTCGGACAGGAAACTAGGTTACTCACTACAAAAGCTACAAACGGTTCATCGTCTCGTTCTTTGACAGCTCCGACCAGAACCAAAAACGGTGCTTCTGCTTCATACTCCTCCTCTTCTAGAGTATTACAATTACGAAAGCTTTCTGGGTGTTACGAATGCCACGCCATCGTTGACCCTAGCAGGTACCCGATTCCGAGGAGTTCTATTTGCCCCTGTCCTCAATGTGGAGAGATGTTCTCCAAGATGGAAAGCTTAGAGCTTCACCAAGCGGTTCGCCACGCTGTTTCGGAGTTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATCATTTTCAAATCAAGCTGGCTAAAAATAGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGGTTTGAAGACTGCCGCGATGCAGTGAAGACACGTGCGCTCGCAAGCACTAGAAAAAACCCGCGGTGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCATTGTAGCGAGTTGTTGTGTGACCTCGGCTCACGTGGCTCAACCGGCCTGTGTGGCTCGATTCCCGGCTGCCGTGTCTGCAGCGTTATCCGTCATGGATTCCAGTGCAAGCCCGGTGAACCCGCTGGCGTACGAACCACGGCCAGTAGCGGTAGGGCCCATGATTCGTTCGAATGCGGCGATGGACGGCGGCGGGCGATGTTGGTGTGTCGTGTCATCGCTGGAAGAGTGAAGCGGATCGCGGAGGATTTGTCGGCCGCAGCGGTGGAGGAGGAGAATTTGTCGGCGGCAGCGGCCTCTTACGATTCCGTTTCACGACAGTCAGGGGTGTATTCGAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTTGTGATCTACGAAGCCCTCCAAACCTAA 1263 52.81 MAHSTSLAINAEKSRKTKPINTERRKKHQNPPPSQPPPPPSAQSSWDQIKNLITCKQVEATRVHEPEKRPPAANSKLGSSYSSICRFRDVVHGNAKIVHRPDNSPETSSLGQETRLLTTKATNGSSSRSLTAPTRTKNGASASYSSSSRVLQLRKLSGCYECHAIVDPSRYPIPRSSICPCPQCGEMFSKMESLELHQAVRHAVSELGPDDSGRNIVEIIFKSSWLKIDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALASTRKNPRCAADGNELLRFHCSELLCDLGSRGSTGLCGSIPGCRVCSVIRHGFQCKPGEPAGVRTTASSGRAHDSFECGDGRRRAMLVCRVIAGRVKRIAEDLSAAAVEEENLSAAAASYDSVSRQSGVYSNLEELIIFNPKAILPCFVVIYEALQT 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12700578 12702761 + CmaCh01G019690.1 Cma01g01969 287662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01969 420 Gene3D - 196 418 - -
Cma01g01969 420 MobiDBLite consensus disorder prediction 118 144 - -
Cma01g01969 420 MobiDBLite consensus disorder prediction 1 47 - -
Cma01g01969 420 MobiDBLite consensus disorder prediction 59 78 - -
Cma01g01969 420 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 207 IPR013087 -
Cma01g01969 420 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 419 - -
Cma01g01969 420 ProSitePatterns Zinc finger C2H2 type domain signature. 179 202 IPR013087 -
Cma01g01969 420 SUPERFAMILY ADP-ribosylation 204 416 - -
Cma01g01969 420 MobiDBLite consensus disorder prediction 16 30 - -
Cma01g01969 420 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 419 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01969 Cma09g00108 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01969 Cma-Chr1:12700578 Cma04g02340 Cma-Chr4:16266503 1.74E-105 dispersed
Cma01g01969 Cma-Chr1:12700578 Cma09g00108 Cma-Chr9:472478 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34385 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01969 - - csv:101222539 655.595