Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01970 ATGGAATCTGAGAAAACCGGATTCTTGTGTCTCTGTCTCTTCTGTCTGTTTGGCCTACTATATGAATATAAGAGATCAGAAACCCCTTTAGTTAATTGGGTGGTTTTTTGTTTGTTTGTCTGTTTCCATTTGAACATGGAAAATGGCGGCGTGAGAGTGAAAAGGGCAGAGATCGATACACGAAAGCCATTTGGTTCTGTCAAAGAAGCTGTTACTTTGTTCGGTGACAAAGTTTTGGGCGGAGAACTGATCTATACCACCAAAAACCTTAAACAGATGAATGGGGGAGAGCATAGAGAAATGATGAAGGGGCAGTTGAAGCTAGGGAGTGTTGCAGCTGAACTAGAAGAAACAAAGCAAAGCCTGGAGAAGGCCAAAGAAGAAAGCATGGCAATGGCTCATTGCCTCTCATCCCTCCAAGAAGAGCTTGAGGACACTAAAAAACAGCTTCAACTTTTAAAGCAACGACAATTTGAAGAAGTCCAAGATGTAGAAGTTGTAGGGGCCGATTCAATGGAATTTCAAAACAAACGCTATGTCACTTTTGCCAACCCGCCGGCCGCCGTTGCCCGGGTTGACATTCCGCCGACCGCCGGCGTCGAGAAGTTTGAGAGGCTCTCGTCTCTTAAAAGAGAGAAGAAGAATAAGATGAAGAACACATTAATCCCTCTCATTTCCGGCATGTTTTCCAAGAAAAAAGGAAATTAA 708 43.64 MESEKTGFLCLCLFCLFGLLYEYKRSETPLVNWVVFCLFVCFHLNMENGGVRVKRAEIDTRKPFGSVKEAVTLFGDKVLGGELIYTTKNLKQMNGGEHREMMKGQLKLGSVAAELEETKQSLEKAKEESMAMAHCLSSLQEELEDTKKQLQLLKQRQFEEVQDVEVVGADSMEFQNKRYVTFANPPAAVARVDIPPTAGVEKFERLSSLKREKKNKMKNTLIPLISGMFSKKKGN 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12704293 12708437 - CmaCh01G019700.1 Cma01g01970 287663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01970 235 Coils Coil 108 132 - -
Cma01g01970 235 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 46 233 - -
Cma01g01970 235 Coils Coil 136 160 - -
Cma01g01970 235 PANTHER OSJNBB0050O03.3 PROTEIN 46 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01970 - - - csv:101222301 223.787
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01970 Cma09g00106 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01970 Cma-Chr1:12704293 Cma16g00955 Cma-Chr16:7402114 2.31E-07 dispersed
Cma01g01970 Cma-Chr1:12704293 Cma03g00688 Cma-Chr3:5687985 7.22E-27 wgd
Cma01g01970 Cma-Chr1:12704293 Cma05g00303 Cma-Chr5:1311385 1.01E-17 wgd
Cma01g01970 Cma-Chr1:12704293 Cma07g00430 Cma-Chr7:1872332 1.99E-14 wgd
Cma01g01970 Cma-Chr1:12704293 Cma09g00106 Cma-Chr9:468990 1.71E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1104 . . . . . . . . . . Cma01g01970 Cma09g00106 Car01g01541 . . Cpe06g00070 . . . . . . . . . . . . . . . . Cone7ag1883 Cone17ag1402 Cone20ag0081 Lsi04g01741 Csa03g04275 Chy04g00421 . Blo17g00746 . Bda08g01220 . . Bpe05g00139 . Bma05g00164 Sed01g2490 Cmo01g02028 Cmo09g00102 . . . Car09g00096 . Cpe02g00072 Bhi09g02093 Tan01g5012 Cmetu10g1833 . Hepe01g1618 Mch11g0121 . Cla05g01872 Cam05g2003 Cec05g2015 Cco05g2074 Clacu05g1996 Cmu05g1877 Cre05g2000 . . . Cme04g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007936 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01970 Cma_Chr01 FPKM 2.8 2.547114 3.321509 4.709051 1.503065 1.590823 2.157415 0.222392 0.362128 0.610449