Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01976 ATGGGCAAGTGTTCATTGCTGTTTCAGCTGAGTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTCATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATCATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTATGATGCTGAATCGCCATTTTCTGCACCTGATATTGTGTTTGGACCAGAAGATGAAAATTTCCATCCATTCACAAGTAAGGTTGATGAAGGAGAAGGATATCATGATTCCTTACAAAACAGTCTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACTATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGCCAGAGGATGTCAAATTTGCAGTGCCATTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTATTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTGCATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGATGCAGTTTCGTTGATCAATGTTAGGAGACGTTTTATAGAGGCGTTGAACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTCCATTTCCTCATGTCAACCCAATTTCCAAAGAAACAACCCTCTCTTGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGGTTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGA 1239 44.47 MGKCSLLFQLSGSPDRLPAINRVISLFSLAAKAMSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIMYDAESPFSAPDIVFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGMCMAEYLPHLEESLEKQVLDAVSLINVRRRFIEALNSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERVFEFLADEALSFKRYCNEAQLQ 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12723897 12728947 - CmaCh01G019760.1 Cma01g01976 287669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01976 412 Pfam Brain and reproductive organ-expressed protein (BRE) 60 361 IPR010358 GO:0070531|GO:0070552
Cma01g01976 412 PANTHER BRISC AND BRCA1-A COMPLEX MEMBER 2 35 411 IPR010358 GO:0070531|GO:0070552
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01976 K12173 BRE, BRCC45; BRCA1-A complex subunit BRE - csv:101214619 729.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01976 Cma-Chr1:12723897 Cma09g00103 Cma-Chr9:455522 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1120 Blo01g01600 . Bda01g00481 . Bpe02g00345 . . Bma01g02370 . . Cma01g01976 . Car01g01547 . . Cpe06g00065 . . . . . . . . . . . . . . . Cone4ag1973 Cone7ag1890 . . Lsi04g01750 Csa03g04285 Chy04g00412 . . . . . . . . . Sed13g1566 Cmo01g02034 . . . . Car09g00091 . Cpe02g00067 Bhi09g02082 Tan01g5023 Cmetu04g1950 . Hepe01g1610 Mch11g0111 . Cla05g01865 Cam05g1994 Cec05g2006 Cco05g2064 Clacu05g1986 Cmu05g1867 Cre05g1991 . . . Cme04g00463
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008486 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 0 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01976 Cma_Chr01 FPKM 11.941482 11.302564 11.544274 10.76218 12.178897 12.689153 12.310519 16.44096 17.040447 17.183121