Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01978 ATGGGTGTATTGTCCACCACTTTCAGCATCGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTCTCAAACGCCGGAGTTTCACCCCTTCCGACAACCGGCTTCGTCCTCGCCGCCGGCGAGTCTCAAACTATCTCCGCTCCCGCGTCTTGGGGCGGTCGGTTCTGGGGCCGAACTCACTGCTCCCAAGACTCCACCGGAAAATTCTCTTGCCTCACTGGAGACTGTGGCTCTGACAAGGTTGAGTGCAGTGGAAACGGTGCAAAGCCGCCGGCAACTCTGGCGGAGTTCACCCTTGACGGCGCCGGCGGGCTGGATTTCTTCGACGTGAGTTTGGTTGACGGTTACAACATCCCTATGCTCGTGGTCCCACAGGGCGGTACCGGCGAGAAGTGCGCGAGCACGGGATGTGTGGTGGATTTGAATGGCGCGTGTCCTTCAGAGCTCAAGCTTACGAGCGTGGACGACGGAAAGAGCATCGCTTGTAAAAGCGCGTGTGAAGCTTTTAACCAACCACAATTCTGTTGTAGTGGCGCGTACGCCACTCCCGATACTTGCAATCCCTCTCCGTATTCGCAAGCGTTTAAAAACGCGTGCCCACGCGCTTACAGCTACGCTTACGACGATTTAACCAGCACGTTTACATGTCTCAACGCCGACTATATCATCACATTTTGCCCCTCGCCCAACACTAGGTAA 702 54.99 MGVLSTTFSIVNKCDYTVWPGILSNAGVSPLPTTGFVLAAGESQTISAPASWGGRFWGRTHCSQDSTGKFSCLTGDCGSDKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCASTGCVVDLNGACPSELKLTSVDDGKSIACKSACEAFNQPQFCCSGAYATPDTCNPSPYSQAFKNACPRAYSYAYDDLTSTFTCLNADYIITFCPSPNTR 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12735370 12737656 + CmaCh01G019780.1 Cma01g01978 287671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01978 233 SMART tha2 8 228 IPR001938 -
Cma01g01978 233 PANTHER BNAA02G17480D PROTEIN 4 231 - -
Cma01g01978 233 CDD TLP-PA 7 227 - -
Cma01g01978 233 Gene3D Thaumatin 6 228 IPR037176 -
Cma01g01978 233 Pfam Thaumatin family 12 228 IPR001938 -
Cma01g01978 233 PANTHER OS03G0233200 PROTEIN 4 231 IPR001938 -
Cma01g01978 233 PIRSF PR5 2 233 IPR001938 -
Cma01g01978 233 SUPERFAMILY Osmotin, thaumatin-like protein 6 229 IPR037176 -
Cma01g01978 233 ProSiteProfiles Thaumatin family profile. 5 228 IPR001938 -
Cma01g01978 233 PRINTS Pathogenesis-related protein signature 7 19 IPR001938 -
Cma01g01978 233 PRINTS Pathogenesis-related protein signature 218 227 IPR001938 -
Cma01g01978 233 PRINTS Pathogenesis-related protein signature 55 66 IPR001938 -
Cma01g01978 233 PRINTS Pathogenesis-related protein signature 107 123 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01978 Cma-Chr1:12735370 Cma20g00764 Cma-Chr20:3604467 7.71E-110 dispersed
Cma01g01978 Cma-Chr1:12735370 Cma12g00404 Cma-Chr12:2094081 3.92E-133 wgd
Cma01g01978 Cma-Chr1:12735370 Cma03g00680 Cma-Chr3:5628886 5.44E-97 wgd
Cma01g01978 Cma-Chr1:12735370 Cma05g00312 Cma-Chr5:1353680 8.21E-136 wgd
Cma01g01978 Cma-Chr1:12735370 Cma07g00422 Cma-Chr7:1812385 2.09E-94 wgd
Cma01g01978 Cma-Chr1:12735370 Cma09g00098 Cma-Chr9:437138 1.29E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01978 - - csv:101214136 442.195