Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01979 ATGATGACACTTGAAGACTTCTTCACCTTGACTGAAATTAAAAATGGGCTTACAGCCCCATGTAGAGTTGAAGAGTTGATTAATGTTATGCAAAAGGAGAAAGATTGTTTTGTGAAGAATGTTAGCGATGCAACCAGGCACTGGGCTGCAGTTGCTGGTGCTATTACTGCTACGGAGAATAAAGATTGTCTTGATCTTTTTATCCAATTAGATGGACTGAGCTTTATTCAAAGATGGCTTAAGGATGCTCAAAAGTTCAGGAACGATACAAATGATAGCACTGTGGAAGAGTCTATCATTGTTTTGTTGCAAGCACTTAAAAAGCTTCATATAACTGCTGAGAAATCTATTTCTTCTGGGATTTTATTTACTGTCAAGGGTCTTTATGAAAATAGTGACCATGGAAAGTCTAGGTTCGGGAAAGAATTAAGTGTACTCCTTGACAGGTGGATGCAGGAGATAAATGATAAAGATTTGCTCCATGATGCAGAAAATGTTAGTGTACATTTTGATGATGCCTCAAATCTTTCTCACGGTGCAGGAAGGTCATCTGCTTCGGGAGGATCTGTTCCAAGAGAATTATCCAGTGATGGAAAACTAGCAATAGAACCTGTTAGAGGCAAAATATTATCCTCAGAGAGCTCTGATGCTCTTCACCCAGATAAGAGTAAAGATTCAGCTGTCCAATCTCCAAGAAACGAGCTTGACTCTCATTCAATTTCTGGAAATTCTGTTGTGAAAGATAGATCTCCAGATTTAACAACAAACGCAGCTGTCGTGTCAGTTCCAATGGAGGATGTTTCAAAGAAGGAAGAAACATCTCTATGTTCTGTTGGTGGAGGAACCTCGGCTGCTATGGCTTGTAGCTTTCCAGTTGCAAGGGAAGGCGGTGATAATGAACAGTTAGATGTCTCAAAGAAGTTGAATGAGTTGCCAGAGCTTGACAGCCAAGTGCACAAGATTGATGGCTCCTCTGGTAAGTCATGTGTGACAGAAAAATCAGATAACTCTACCCATTCTCCCATGCAGGATCTGGGATCTGTCACGGAAGGTTTTGATGCTGCAAATGGTGAAGAGTCTGCTAAAGAAGCTTCAGCTCAGCAAGATAATGATGGTCTTGACAATGCTGGTGTTTCTCGACATAGTTCTAGTCTAGATAGTGAGAGAGTTACCACATTGGATTCTGAAAATGGGAAATCAGATAAAAAGACAAATTATTCTAGCATGCCTGTGTTCAAATCTGCAGGCCTAGATGTTGAGCACTATCGAAATACTCTGCGGGATTTGTCTATGAGTGGCAGTCGAATAGGAAAACATGAAGATCGTGGGGCTTCTTTTTCGAGGATGGAAGACTTTGGTCAAGTTAATGGCGAAAGACAGCCTCGGAGAAAGGAAGATGATGATGTAATGACTGATTCTGAATTCTCCAAACCGAAATTAAATCCCAAAACTTCAAATATAAAGAATAATCAGTCAGACATGGAACTTGAGTATGGTATAGTAGATGCTCTGGAGGTTGCTCGGCAAGTAGCTCAAGAAGTTGAAAGAGAAGTGGTGGAATATAGAGAGCCATCCTGCAGCTCGTCTTCTGATAAAATTTCTGATGGTGGAATCAGGCAGCTGGGTAAACTAGACACCATTGCAGAAAAACAGGACCTTCCAGCTGATCACCAGGGAACGGAGGTCCAATCTGCAAAAAGTCATGTTGCTGAATCATATTCTGATGCGGAGACATGTTTGACGCATCCAGATAATGTAGATACTCAACCTGAAAATTTAAATGAAATGGAATCCTCCCTGGTCACTGAAGCAGCTCAAGGGGCAGATACAAGTACAGAAAAAGGATTTTGTGAATTTGATCTAAACCAAGACGCATTTAATGATGATGCAGAGCAGTTAGTAACTCCGGTGTCTTTACCGGTATCTGTTATCTCTGTTTCTAGACCAGCTGCTCCTTCTGGATTGCCTCTAACACCTTTGCAGTTTGAAGGGGCACTTGGATGGAGAGGCTCTGCAGCCACTAGTGCTTTCCGCCCTGCTTCCCCGCGTAAAGTTCCTGATAGTGATAGGACTCTTTCTAGTGGGGGAAATTCTGATAGTTCAAAGCAGAGGCCGGACTTTCTTGACATTGATTTGAATGTGGCTGAGACTGGAGATGAAGCCAGGAAACAAAACCAGGGATCATCTTTCCCACAATCCAGAGAGTTTTTGGTTGAAAGTGGACAAAGAAGATCTGGGGGACTAAAGCTGGACCTTAACTGTGTTGGTGAGGATGTTGATGCTCCAGCATCAGATTTGAGGGTGGAGGGACACTTTAACAACCAGAATAGCTACAGTGCCTCTCCTGCCTGCTCTTCTTCATCGCTGCAACCTTTGGTAAGAAATATTGATTTGAATGATAGGCCGTTTGTTCAAGGTGACGCTTCAGATCAAGGTCCGGGTAAGTACTGTCAAAATATAAGTGCTTATGGAGGGTCTAATAAAGATGCTTCTGTCATTTCCATTATGGGTACAAGGGTTGAAGTTGGTGGAAAAGATTTTGCTCTTCGTGCTTCATCTTTGCCAAACGGCAGAACTGTTGAGCCTGCTGGAATAGGTGCTACTTTGGCAAGAACAGGAGATATATTAGGGATGGGTTCGACAGTTTCTTACCACCAGACTCCTTTTATTGGTTACAATGGATTGACACCACGGCCAACCATTTCTTTCTCAACCATGTATGAACCTAGTGGCTCAATTCCCTACATGGTGGATTCAAGAGGAGCTGCTGTTATGCCTCAAATTATGGGTCCTATGTCAGCTGTTCCGCCTTCCTCCTACTCTCACACTCCATTTTTCATGGGCATGACAGATTCACAGCTGACCCCCAATGGCGTTGCTCATTCACGTCCTAAATTTGATCTGAATTCTGGATTGAGTGATTCTGGGGGTTTAAAGCAGTTTCTTTTCCCAGGTCATCTCCGATCCATGGAAGAGCAGTCGAGACAACCTTCAAGTTCTGGAGTTGGTGCAAAAAGGAAAGAACCAGATTGCCCTGATGGTGGCTGGGAAGGGTATGGAAACAGTAATCCTTCCTCACAAGATCCTGTTCTCCGTTTCAGACCTTTTCGTTAA 3114 42.87 MMTLEDFFTLTEIKNGLTAPCRVEELINVMQKEKDCFVKNVSDATRHWAAVAGAITATENKDCLDLFIQLDGLSFIQRWLKDAQKFRNDTNDSTVEESIIVLLQALKKLHITAEKSISSGILFTVKGLYENSDHGKSRFGKELSVLLDRWMQEINDKDLLHDAENVSVHFDDASNLSHGAGRSSASGGSVPRELSSDGKLAIEPVRGKILSSESSDALHPDKSKDSAVQSPRNELDSHSISGNSVVKDRSPDLTTNAAVVSVPMEDVSKKEETSLCSVGGGTSAAMACSFPVAREGGDNEQLDVSKKLNELPELDSQVHKIDGSSGKSCVTEKSDNSTHSPMQDLGSVTEGFDAANGEESAKEASAQQDNDGLDNAGVSRHSSSLDSERVTTLDSENGKSDKKTNYSSMPVFKSAGLDVEHYRNTLRDLSMSGSRIGKHEDRGASFSRMEDFGQVNGERQPRRKEDDDVMTDSEFSKPKLNPKTSNIKNNQSDMELEYGIVDALEVARQVAQEVEREVVEYREPSCSSSSDKISDGGIRQLGKLDTIAEKQDLPADHQGTEVQSAKSHVAESYSDAETCLTHPDNVDTQPENLNEMESSLVTEAAQGADTSTEKGFCEFDLNQDAFNDDAEQLVTPVSLPVSVISVSRPAAPSGLPLTPLQFEGALGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRPDFLDIDLNVAETGDEARKQNQGSSFPQSREFLVESGQRRSGGLKLDLNCVGEDVDAPASDLRVEGHFNNQNSYSASPACSSSSLQPLVRNIDLNDRPFVQGDASDQGPGKYCQNISAYGGSNKDASVISIMGTRVEVGGKDFALRASSLPNGRTVEPAGIGATLARTGDILGMGSTVSYHQTPFIGYNGLTPRPTISFSTMYEPSGSIPYMVDSRGAAVMPQIMGPMSAVPPSSYSHTPFFMGMTDSQLTPNGVAHSRPKFDLNSGLSDSGGLKQFLFPGHLRSMEEQSRQPSSSGVGAKRKEPDCPDGGWEGYGNSNPSSQDPVLRFRPFR 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12738695 12741808 - CmaCh01G019790.1 Cma01g01979 287672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01979 1037 MobiDBLite consensus disorder prediction 989 1037 - -
Cma01g01979 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 2 1021 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 177 191 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 310 408 - -
Cma01g01979 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 2 1021 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 687 703 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 232 252 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 455 474 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 361 391 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 433 491 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 673 707 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 557 571 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 211 252 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 173 198 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 477 491 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 215 231 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 433 447 - -
Cma01g01979 1037 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 21 159 IPR035441 -
Cma01g01979 1037 ProSiteProfiles TFIIS N-terminal domain profile. 74 157 IPR017923 -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 321 345 - -
Cma01g01979 1037 MobiDBLite consensus disorder prediction 554 587 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01979 - - - mcha:111006388 1677.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01979 Cma09g00097 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01979 Cma-Chr1:12738695 Cma11g00108 Cma-Chr11:577583 3.33E-10 dispersed
Cma01g01979 Cma-Chr1:12738695 Cma09g00097 Cma-Chr9:433569 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1137 . Blo12g00881 . . . . Bma04g00250 Bma01g02376 . . Cma01g01979 Cma09g00097 Car01g01551 . . Cpe06g00060 . . . . . . . . . . . . . . . . . Cone17ag1414 Cone20ag0069 Lsi04g01755 Csa03g04289 Chy04g00407 . . . . . . . . . Sed01g2483 Cmo01g02038 Cmo09g00094 . . . Car09g00085 . Cpe02g00065 Bhi09g02076 Tan01g5035 Cmetu04g3193 . Hepe01g1606 Mch11g0106 . Cla05g01862 Cam05g1991 Cec05g2003 Cco05g2061 Clacu05g1983 Cmu05g1864 Cre05g1988 . . . Cme04g00459
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008019 0 1 1 2 0 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01979 Cma_Chr01 FPKM 10.872832 12.273967 12.893994 12.495235 9.617266 9.399358 10.510856 12.353331 11.61343 12.077118