Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01981 ATGAGGAAAACATCGTTCAATCTTCTTGTTTGCAACTTCTTCATGTTCTGTTTACTTCTTTTCTCTGCCCGTTTTTGCTTCGCCAATCGGGATATGGAGGCGCTGTTGAAAATGAAGAGTGCCTTGATTGCACCAGGGAGATCGGGGCTTACTGATTGGCAACCGTCGTCTTCGCCTTCTGCTCATTGCGCCTTCTCTGGAGTTTTGTGCGATGTCGATTCTAGAGTTGTTGCGCTTAACGTCTCGAATTTCCGTCTGTTTGGCAGGATTTCGCCGGCGATTGGGATGTTGGAAAAGCTTGTTAACTTGACGTTAGTGAATGACAATCTCACAGGAGTGATTCCTTTCGAAATGGCGAAACTCACGTCGCTTAAGACTCTGAACCTCTCTAATAACTTATTCCGGGATAGGTTGCCGGCGGAAATCACGCTCGGGATGATGGAACTCGAGGTTTTCGATGTCTATAACAACAATTTCTCTGGTATGCTTCCGGTGGAGTTCGTCAAGCTGAAGAAGCTTAAGTATCTAGATCTCGGCGGTAACTTCTTTACCGGTCAGATTCCGGAGGCTTACTCTGAGATGGAGATGCTCGAGTTTTTGAGCTTGAGGGGAAATGCGCTTTCCGGGAGACTTCCGGCGAGTTTGGCGCGTTTGAAGAATCTTACGCATCTTTACGCTGGATATTATAACCATTACGACGGCGGGATTCCGGCTGTGTTTGGAACGTTGAGTGCTCTCGAGCTTCTCGATTTAGGGAACTGTAATCTCTCCGGTGAAATTCCACCGAGTTTGGGGAATTTGAAGGTCTTGCACTCTCTATTTCTACAAGTAAACAATCTAACGGGTCGGATTCCTCCCGAACTTTCCGGTTTAGTTAGTCTCAAATCGCTGGACCTCTCGCTGAACGAACTCACCGGCGAGATACCGGCGGGTTTCGTGGCACTGCAGAAAATTACACTCCTCAATTTATTCGGCAACAAGCTCCACGGTCCAATTCCTGGTTTCGTCGGTGATTTTCCGCATCTCGAAGTGCTTCAGTTGTGGAATAACAACTTCACGCTCGAGCTTCCAGCGAATCTGGGGCGTAATGGTAAACTATTTCTGCTTGACGTGGCTACAAATCATCTAACTGGACTCATACCTCCGGATTTATGTAATGGTAGATTGAAGACTTTGATTCTGTTGGATAATTACTTCTTTGGGCCCATCCCTGAGGAATTAGGACGGTGTGATTCGCTTAAGAAAATAAGAATTGCTGGAAATTTCTTCAATGGAACCGTTCCGGCAGGGTTCTTCAACTTTCCGGCATTGGAACTACTCGATATTAGTAACAATTACTTCTCTGGCGCTCTTCCGTCGCGAATGTCGGGCGAGTTTCTTGGAAGTCTGCAGCTCAGTAACAACCATATCACAGGGGAAATTCCGGCGGCGATTAAGAATTTAAAAAACTTGCAGGTTCTTTCCCTGGAACATAACGAATTCACCGGAAATTTACCTGTGGAAATATTTGAATTGAATAAGTTGCTTAGAATCAACACCAGCTTCAACAACATTAGCGGCAAAATTCCGCATTCGCTCGTTCAGTGCACGTCTTTAACATCAATTGATCTCAGTGAAAACTACCTTGTTGGCCAAATTCCCAAAGAAATTTCGGATCTGAAAATCTTGAGCGTTCTCAATTTGTCAAGTAATCAACTGACGGGCCAAATTCCGAATGAAATTCGGTCGATGATGAGTCTTACAACTCTTGATTTGTCCTACAACAATTTCATAGGTAGAATTCCCACCGGCGGTCAGTTTTCAGTATTCAACGGCAGCGCATTCGCCGGAAATCCAAACCTCTGTTCCCCTAACGATGGCCCTTGCGCATCGCTACACAGTAACACGAAATCCATAAAGCTAATCCTCCCAATCGTTGCGGTATTCATCGTTTTGTTATGCGTACTCGCCGGAGTTTACATCAGGAAGAGAAAGAGGATTCAGAAATCAAAGGCATGGAAACTCACGGCGTTCCAACGCCTCGATTTCAAAGCGGAAGACGTCCTAGAATGCTTGAAGGAGGAAAATATCATCGGCAAAGGTGGTGCCGGGGTCGTCTACCGTGGATCTATGCCGGACGGCTCCATCGTGGCGATCAAACTGTTGCTAGGAAGTGGCCGGAACGACTATGGTTTCTCTGCAGAAATTCAGACCTTGGGGCGGATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAAAGACACGAATCTGCTGCTGTACGAGTACATGCCAAATGGGAGCTTGGACCAAAGGCTGCATGGAGCGAAGGGCGGGCACTTTCACTGGGACTTGCGGTACAAGATCGCGATGGAAGCCGCCAAGGGGCTCTGTTACCTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAATATACTGCTGGATAAGTTCTTCGAGGCACATGTCTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTATGGCTACATCGCTCCAGAATACGCCTACACGCTGAAAGTGGACGAGAAGAGCGACGTGTACAGTTTCGGCGTGGTGCTGTTAGAGCTGATAGCCGGGAGGAAGCCAGTGGGAGATTTTGGCGAAGGCGTGGACATAGTAAGGTGGGTCCAGAAAACCATATCAGAACTGTCTCAGCCGTCGGATGCAGCGTCAGTGTTAGCCGTGGTGGACTCGCGGCTGACCGAATACCCTCTCCAAGGCGTAATCCACCTCTTCAAAATAGCGATGATGTGCGTCGAAGAAGACAGCTCCGCAAGGCCTACCATGAGGGAAGTGGTCAAAATGCTCTCGAATCCGCCAAGGTCTGCCCCTACTCTCATCAACCTCTAA 2916 48.08 MRKTSFNLLVCNFFMFCLLLFSARFCFANRDMEALLKMKSALIAPGRSGLTDWQPSSSPSAHCAFSGVLCDVDSRVVALNVSNFRLFGRISPAIGMLEKLVNLTLVNDNLTGVIPFEMAKLTSLKTLNLSNNLFRDRLPAEITLGMMELEVFDVYNNNFSGMLPVEFVKLKKLKYLDLGGNFFTGQIPEAYSEMEMLEFLSLRGNALSGRLPASLARLKNLTHLYAGYYNHYDGGIPAVFGTLSALELLDLGNCNLSGEIPPSLGNLKVLHSLFLQVNNLTGRIPPELSGLVSLKSLDLSLNELTGEIPAGFVALQKITLLNLFGNKLHGPIPGFVGDFPHLEVLQLWNNNFTLELPANLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKTLILLDNYFFGPIPEELGRCDSLKKIRIAGNFFNGTVPAGFFNFPALELLDISNNYFSGALPSRMSGEFLGSLQLSNNHITGEIPAAIKNLKNLQVLSLEHNEFTGNLPVEIFELNKLLRINTSFNNISGKIPHSLVQCTSLTSIDLSENYLVGQIPKEISDLKILSVLNLSSNQLTGQIPNEIRSMMSLTTLDLSYNNFIGRIPTGGQFSVFNGSAFAGNPNLCSPNDGPCASLHSNTKSIKLILPIVAVFIVLLCVLAGVYIRKRKRIQKSKAWKLTAFQRLDFKAEDVLECLKEENIIGKGGAGVVYRGSMPDGSIVAIKLLLGSGRNDYGFSAEIQTLGRIKHRNIVRLLGYVSNKDTNLLLYEYMPNGSLDQRLHGAKGGHFHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKFFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVQKTISELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVKMLSNPPRSAPTLINL 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12745016 12748796 - CmaCh01G019810.1 Cma01g01981 287674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01981 971 PANTHER UNNAMED PRODUCT 11 965 - -
Cma01g01981 971 Gene3D Phosphorylase Kinase; domain 1 650 759 - -
Cma01g01981 971 Gene3D Transferase(Phosphotransferase) domain 1 760 965 - -
Cma01g01981 971 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 11 965 - -
Cma01g01981 971 SUPERFAMILY RNI-like 348 602 - -
Cma01g01981 971 Pfam Leucine rich repeat 531 590 IPR001611 GO:0005515
Cma01g01981 971 SMART serkin_6 685 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01981 971 Gene3D Ribonuclease Inhibitor 30 144 IPR032675 -
Cma01g01981 971 Pfam Protein kinase domain 686 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01981 971 SUPERFAMILY L domain-like 70 399 - -
Cma01g01981 971 Gene3D Ribonuclease Inhibitor 230 387 IPR032675 -
Cma01g01981 971 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515
Cma01g01981 971 Pfam Leucine Rich Repeat 172 189 IPR001611 GO:0005515
Cma01g01981 971 Pfam Leucine rich repeat N-terminal domain 28 71 IPR013210 -
Cma01g01981 971 Pfam Leucine Rich repeat 293 307 IPR001611 GO:0005515
Cma01g01981 971 ProSiteProfiles Protein kinase domain profile. 685 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01981 971 Gene3D Ribonuclease Inhibitor 388 622 IPR032675 -
Cma01g01981 971 SMART LRR_typ_2 481 505 IPR003591 -
Cma01g01981 971 SMART LRR_typ_2 243 267 IPR003591 -
Cma01g01981 971 SMART LRR_typ_2 553 577 IPR003591 -
Cma01g01981 971 SMART LRR_typ_2 194 218 IPR003591 -
Cma01g01981 971 SMART LRR_typ_2 121 145 IPR003591 -
Cma01g01981 971 SMART LRR_typ_2 291 315 IPR003591 -
Cma01g01981 971 SMART LRR_typ_2 339 363 IPR003591 -
Cma01g01981 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Cma01g01981 971 SUPERFAMILY Protein kinase-like (PK-like) 677 958 IPR011009 -
Cma01g01981 971 Gene3D Ribonuclease Inhibitor 145 229 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01981 Cma09g00096 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01981 Cma-Chr1:12745016 Cma07g00607 Cma-Chr7:2629596 0 dispersed
Cma01g01981 Cma-Chr1:12745016 Cma09g00096 Cma-Chr9:426714 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68303 PF00069 Pkinase 2.60E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01981 K00924 - csv:101221360 1641.32