Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01983 ATGGCTTCACCTTCATTAAAACTGTGTTTTTGTGTTATTAATGAATTGGTCTGTCAAAAAACCATTTTGCTCTCAACAGAAAGTGGGAAGGGCTCAACGCCGGCGAGGCTCTGTTGTCTTTCAGCTTTGGCTCATCTCTCAGAGAGAAAGGATATGTTATCGATCGGAATTGAAGACGAAGAGAAATGGCTGGCGGAAGGAATCGCCGGCATTCAACACAATGCCTTCTACATGCACCAAGCCGTGGACGCGAACAATCTCAGAGAAGCGCTCAAATACTCGGCTCAGATGCTTTCGGAGCTTCGAACTTCGAAGCTTTCACCGCATAGATATTATGAACTCTATATGCGAGCCTTTGATGAATTGAGGATGTTGGAGATCTTTTTCAAGGATGAAAGTAGGCATGGCGTAATGGTTGTTGATCTGTATGAACTCGTGCAACACGCCGGGAACCTATTGCCCAGATTGTATCTCCTCTGTACCGTTGGCTCGGTTTACATGAAAACTAAGGAGGTCCCAGCGAAAGAGGTCCTCAAAGATCTTGTAGAAATGTGTCGTGGGGTTCAACATCCAATACGTGGTCTCTTTCTCAGAAACTATCTAGCCCAAGTCAGTAGGGACATATTGCTCGATATCAATTCTGAGTGCGAAGGAGATGCTGACACTGTCATGGAGGCTGTGGAATTCATGCTACAGAATTTTACTGAAATGAATAAACTGTGGGTGCGAATACAGCTTCAGGTCTTATGGTGTGGACCTGCTCATTTGAGAGAGAAGCAGGAAAAAGAAAGAACCGAACTCCGCGATCTTGTAGGAAAGAATCTCCATGTTCTCAGTCAGATAGAGGGTGTGGACCTTGAAATGTACAAGCAGTCCGTTTTACCTAGAGTCTTGGAGCAGGTGGTCAACTGCAAAGATGAGTTAGCTCAGTACTATCTGATGGATTGCATTATTCAGGTGTTTCCAGACGAATATCATTTGCAGACACTTGAGACATTGTTGGGTGTTTGCCCGCAGCTTCAGGCAACCGTTGACATCCGGATGGTTCTATCTCAATTAATGGATAGACTATCAAACTATGCTGCGTCAAATGCAGATGTAATACCTGATTTTCTGCATGTAGAAGCCTTTGCTAAGTTGAGCAATGCCATTGGGAAGGTAATTGAAGCACAGGTTGACATGCCTATTGTTGGCGCTATAACATTGTATGTCTCCCTTCTGACATTTACCCTTCGTGTTCATCCAGATCGGCTTGACTATGTGGACCAAATATTGGGAGCATGCGTTAAGACACTTTCCAGCCAACCAAAGCTTGAAGATACTAGAGCGACAAAACAAATAGTTATACTTCTCAGTGCTCCATTAGAGAAGTATAATGATATTGTGACGGCTCTTACACTCTCAAATTATCCTCGTGTCATGGACCACCTGGACAATGCCACAAACAAAGTTATGGCCATGGTCATCATTCAAAGTATAATGAATAGTAACTCTTGCATTTCCACTGCTGATAAGGTTGACGTTTTGTTTGAACTAATAAAAGGGCTTATCAAGGACTTGGAAGAAATTACTGTTGATGAGCTTGACGAAGAGGATTTCAAGGAAGAGCAAAATTCTGTTGCCCGCCTCCTACACATGCTACATAATGATGATCCACTTGAAATGTTAAAGATTATTTATGCTGTGAAGAAACACATTTTGTGTGGAGGACCAAGTCGCCTTCCTTTCACTGTTCCTCCCCTGATATTTTCTGCACTCAGTTTAATTAGACGGTTGCAAAATCAAGATGGGGATGTTGTGGGAGAAGAGCAAAGCGAAGCTGGGGATGTGGTAGAAGAAATGCATGCTACACCAAAGAAAATATTTCAGCTTTTAAATCAGCTTATTGAGGCTCTTTCCTCTGTTCCAGCTCCTGAACTGGCATTGAGGTTATACCTGGAATGTGCTGAGGCAGCTAATGACTGTGATCTTGAGCCTGTTGCATACGAGTTTTTTACTCAAGCATTTATAATCTATGAAGAGGATATTGCGGATTCTAAGGCTCAAGTGACTGCAATACATCTCATTATTGGGACTCTCCAGAAGATGAATGTGTTTGGCATTGAAAACAGAGATACTTTGACACACAAAGCTACTGGGTACTCTGCAAAGCTCCTAAAGAAACCTGATCAGTGCAAGGCTGTTTATGCATGCTCACATCTCTTTTGGGTTGATGATCCAGAAGGCATTAAGGATGGAGAGAGAGTTCTTCTTTGCCTGAAGCGTGCCTTAAGAATTGCAAATGCTGCTCAACAGATGGCTAATGTTACACGGGGTAGCGGTGGACCCATCACACTTTTTGTTGAAATACTGAACAAGTACCTGCACTATTTCGAGAAAGGAAACCAGCAGATTACAAATGCTGCAATTCAAGGGTTGATTGAATTAATAAGAACTGAATTGCTGACCGACACCCCGAGTGCCAATCCTCCGTCAGATGCTTTCTTTACCAGCACACTTCGGTACATTCAGTTCCAGAAACAGAAAGGCGGTGTGATGGGTGAAAGATATGACTCTATCAAGGTTTGA 2568 42.99 MASPSLKLCFCVINELVCQKTILLSTESGKGSTPARLCCLSALAHLSERKDMLSIGIEDEEKWLAEGIAGIQHNAFYMHQAVDANNLREALKYSAQMLSELRTSKLSPHRYYELYMRAFDELRMLEIFFKDESRHGVMVVDLYELVQHAGNLLPRLYLLCTVGSVYMKTKEVPAKEVLKDLVEMCRGVQHPIRGLFLRNYLAQVSRDILLDINSECEGDADTVMEAVEFMLQNFTEMNKLWVRIQLQVLWCGPAHLREKQEKERTELRDLVGKNLHVLSQIEGVDLEMYKQSVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGVCPQLQATVDIRMVLSQLMDRLSNYAASNADVIPDFLHVEAFAKLSNAIGKVIEAQVDMPIVGAITLYVSLLTFTLRVHPDRLDYVDQILGACVKTLSSQPKLEDTRATKQIVILLSAPLEKYNDIVTALTLSNYPRVMDHLDNATNKVMAMVIIQSIMNSNSCISTADKVDVLFELIKGLIKDLEEITVDELDEEDFKEEQNSVARLLHMLHNDDPLEMLKIIYAVKKHILCGGPSRLPFTVPPLIFSALSLIRRLQNQDGDVVGEEQSEAGDVVEEMHATPKKIFQLLNQLIEALSSVPAPELALRLYLECAEAANDCDLEPVAYEFFTQAFIIYEEDIADSKAQVTAIHLIIGTLQKMNVFGIENRDTLTHKATGYSAKLLKKPDQCKAVYACSHLFWVDDPEGIKDGERVLLCLKRALRIANAAQQMANVTRGSGGPITLFVEILNKYLHYFEKGNQQITNAAIQGLIELIRTELLTDTPSANPPSDAFFTSTLRYIQFQKQKGGVMGERYDSIKV 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12752618 12762087 + CmaCh01G019830.1 Cma01g01983 287676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01983 855 PANTHER VACUOLAR SORTING PROTEIN 35 56 855 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cma01g01983 855 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 56 855 - -
Cma01g01983 855 Pfam Vacuolar protein sorting-associated protein 35 63 812 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cma01g01983 855 PIRSF Retromer_Vps35 53 855 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cma01g01983 855 Gene3D - 521 840 IPR042491 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01983 K18468 VPS35; vacuolar protein sorting-associated protein 35 - csv:101213893 1476.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01983 Cma09g00094 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01983 Cma-Chr1:12752618 Cma16g01247 Cma-Chr16:9424372 0 dispersed
Cma01g01983 Cma-Chr1:12752618 Cma09g00094 Cma-Chr9:409189 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1148 Blo01g01607 . Bda01g00474 . . . . Bma01g02380 . . Cma01g01983 Cma09g00094 Car01g01554 . . Cpe06g00056 . . . . . . . . . . . . . . . . . . . . Csa03g04293 Chy04g00403 . . . . . . . . . Sed01g2488 Cmo01g02041 Cmo09g00091 . . . Car09g00081 . Cpe02g00062 Bhi09g02073 Tan01g5039 Cmetu04g2094 . Hepe01g1603 Mch11g0102 . . . . . . . . . . . Cme04g00456
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001755 3 3 2 3 2 2 4 2 2 2 1 1 4 2 1 3 1 2 4 2 2 2 2 2 2 1 2 4 3 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01983 Cma_Chr01 FPKM 6.66433 7.322553 1.663615 1.971367 5.427147 4.943101 4.890986 5.098047 4.257839 4.454073