Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01984 ATGTTCGCGGTGGCAAAGCCATCCATTTGTTCCAGGCTTGGTCTGCTGATATATAGCAGCTTCTACGTCGGAACACCCAATTTCTCATCGGGATCAGCGATGCAGAACGGAGATTACGGTACACCTCCATATTTTCAATACCCAAATCTTCAAAACCTTAGCCTCAATCCAAGCCCTAATCCAGTTTCCCCTCCCCCGGATCGTAACCAGAGCGCTTACGCCTCGGCGCCGCCCTTCTCCACCAATTACGGCGGTTCCGATTACCCTGGTTATGCCCCCAATTATCCCCCCTACTCCCAGAATTCCGATCCCGTCCCTGCCTCTCCGACTGCGCCTCTTTACAACCCTCAGTCATCGAATCCTAATCTCCAGATATTCAATCCCACTTCGCAGCCACCTGCTTTCCCTCCATTTGAGTCTCATGTGCCTTATCAATCTCCTTCTCAGCCGCAATCGTATAATTCAACGTACGATCACCATCAAACGGCTCCCAATTATGCTCCCCCTCCACCGTCCTCAATTCCCTCGAATCAGGGCTCTAATTCAACCCCCAGTCCTAATTCTCATTTCTCATCCGTTTATTCGGCTCCTTTTGGCTCTTTGGCCCAGCCCGCGTATGAAAACCCATATGAAAGTTCGGTGAAATTTGATCAGGGAGGCGGATACGCTGATGATAGATATGGAGGTTATGGTCGAAGTCGGTCTGATTTGGGTCCGGACTTGTACGGTAAGCGGCCGGAGGATGCGGCATCGCGCTTCGACTCTGGCTACGATGACGGTTTTGGCGAAGGCGTATATGCTTACCAAGGTGGCAAAGTTGAGCCTTACGGGGCTCGCGGTACAGCTCCTAAGTCTTCGACGTGGTCAACAGGGCCTGCTTTTGATGATTATGGGAGGCCGATAAATATTCCTTCGAAGAAAGACCCACCGACGAGTTCACTGAAAGTAGTTAGGGCGATCCCTAAGGTGGAAGCTCAAGAAGACGTCAAAAATTGGGTGCAGAAGTTTCGAGTGAAGCTCTTGGCTGAAAGTGGAGGTCAGAGCACCATGGATGTACTTTGTCAGGTTGGTCTGGATGGTATTCGTATGCTTGATCCAAATTCTAGTCGTACATTAAGGATATATCCTCTTGAGACCATCACTAGATGTGAAGTATATGATTCATCTACCCTGGTTTTCTGGTCGAAGAGCTCTGTGGATATTGAGCCACGGCGTATTAGATTGCAGTCAAACAAGTACACTACCAACACACTTCTGGACACGGTGACTGCTGCAACTGTACAGTTCAAGGAAATGGGTGGAAGAAGTAGGCCTTCTGAATCTTTTAAGGCGCCTGAGCAGTCTGCAGAGAAGAAGAAAGGGTTGGTTGATTGGGTGACTCTGATGAAGCCAGGCAACGAGGAGAAAGACCATTGGGTACCTGATGAAGCAGTCACAAAATGTACAGCCTGTGGAACAGACTTTGGGGCTTTTGTACGAAGGCATCACTGCAGAAATTGTGGAGACATTTTCTGCGATAAATGCACGCAAGGTAGAACAGCTCTGACGGCTGAAGAGAATTCTCCTCCAGTTCGTGTCTGTGACAGATGCATGGCAGAAGTGACTCATAGGCTCACTAATGCCAAGGAACTGGCTAGTAAGCCTGCAGGATTGCATAGTCATGAGGATCTTGCCAAAAAACTTAAGGATGAAATGGAGAGAAACGGTTGGTCATCAGGGAATGCCACAGCATCCAAATCTGACGGATCTGGGAAACGGATGAAGGAAGTTGCATGTCCTACTTGTACTGTTCATTTACAGGTCCAGGTTCCAAGCTCGGGTTCTGAGACGATCGAGTGTGGGGTTTGCCAGCATCCGTTCCTTGTGAGCGCTCACTGA 1878 49.2 MFAVAKPSICSRLGLLIYSSFYVGTPNFSSGSAMQNGDYGTPPYFQYPNLQNLSLNPSPNPVSPPPDRNQSAYASAPPFSTNYGGSDYPGYAPNYPPYSQNSDPVPASPTAPLYNPQSSNPNLQIFNPTSQPPAFPPFESHVPYQSPSQPQSYNSTYDHHQTAPNYAPPPPSSIPSNQGSNSTPSPNSHFSSVYSAPFGSLAQPAYENPYESSVKFDQGGGYADDRYGGYGRSRSDLGPDLYGKRPEDAASRFDSGYDDGFGEGVYAYQGGKVEPYGARGTAPKSSTWSTGPAFDDYGRPINIPSKKDPPTSSLKVVRAIPKVEAQEDVKNWVQKFRVKLLAESGGQSTMDVLCQVGLDGIRMLDPNSSRTLRIYPLETITRCEVYDSSTLVFWSKSSVDIEPRRIRLQSNKYTTNTLLDTVTAATVQFKEMGGRSRPSESFKAPEQSAEKKKGLVDWVTLMKPGNEEKDHWVPDEAVTKCTACGTDFGAFVRRHHCRNCGDIFCDKCTQGRTALTAEENSPPVRVCDRCMAEVTHRLTNAKELASKPAGLHSHEDLAKKLKDEMERNGWSSGNATASKSDGSGKRMKEVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12762108 12767746 + CmaCh01G019840.1 Cma01g01984 287677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01984 625 SMART fyve_4 467 536 IPR000306 GO:0046872
Cma01g01984 625 MobiDBLite consensus disorder prediction 212 242 - -
Cma01g01984 625 PANTHER PROTEIN FREE1 34 625 - -
Cma01g01984 625 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 475 535 IPR017455 -
Cma01g01984 625 MobiDBLite consensus disorder prediction 142 162 - -
Cma01g01984 625 CDD FYVE_EEA1 472 534 - -
Cma01g01984 625 Pfam FYVE zinc finger 471 535 IPR000306 GO:0046872
Cma01g01984 625 MobiDBLite consensus disorder prediction 565 586 - -
Cma01g01984 625 PANTHER PROTEIN FREE1 34 625 IPR045893 GO:0036258|GO:0043130
Cma01g01984 625 MobiDBLite consensus disorder prediction 50 189 - -
Cma01g01984 625 CDD PTB 337 393 - -
Cma01g01984 625 MobiDBLite consensus disorder prediction 104 129 - -
Cma01g01984 625 MobiDBLite consensus disorder prediction 67 82 - -
Cma01g01984 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 539 IPR013083 -
Cma01g01984 625 SUPERFAMILY FYVE/PHD zinc finger 470 547 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01984 - - - mcha:111008454 1036.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01984 Cma09g00093 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01984 Cma-Chr1:12762108 Cma13g00579 Cma-Chr13:5803216 3.53E-10 dispersed
Cma03g00510 Cma-Chr3:4957789 Cma01g01984 Cma-Chr1:12762108 1.26E-10 transposed
Cma01g01984 Cma-Chr1:12762108 Cma09g00093 Cma-Chr9:403869 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1153 . Blo12g00878 Bda01g00473 . Bpe02g00338 Bpe04g00253 Bma04g00253 Bma01g02381 . . Cma01g01984 Cma09g00093 Car01g01555 . . Cpe06g00055 . . . . . . . . . . . . . . . . . . . Lsi04g01762 Csa03g04294 Chy04g00402 . . . . . . . . . Sed01g2478 Cmo01g02042 . . . . Car09g00080 . Cpe02g00061 Bhi09g02071 Tan01g5041 Cmetu04g2661 . Hepe01g1602 Mch11g0101 . . . . . . . . . . . Cme04g00455
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005990 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01984 Cma_Chr01 FPKM 43.591373 47.420357 34.63073 32.652763 25.633499 22.577408 24.068117 48.086685 47.858723 46.824745