Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01985 ATGGCGACGGTTAATCACCGTTCGCCTAGTCCAACTAGTTTCAAGGGCGATAATACCTACGAGTTCCCGCCGAAGAATCATCTGTGTGCTTGGGCTGCAGTCGTCCGAGGCGAGCCGGAATTGATCTCTCAGTCTCCTTTATCTTCGTCATCATCTTTCTCTACAGTTTCTGCTCCAGAAACACCAGAAACCCCAGCTCCTGCTCCGACGTCTGATTTCTTTGCATCTTCTGAAGAGGGTGGTCCTGTAATGGGGGCAGACTCTTGGCCCGATCTTGCAGAGTCCGCGAAGGCTTCTCCTAAATTAGCAGGACCTACCATTGTACCCCCTCAGCGGCAAGCTACAAATAATGCCAAATCGGACCCCAGTCTGAAACATCCAGTTGTTGCTCGACAAAGATCCTCGAGGCGGTCTGGAGGTGGTGGCAGCTCAATGGGAGGGCCTGCACGAGGCTTTTATCGCCCTCCACCGCCACCGCCACCACCTTTTCCTGTGTTTCAAATTCCATGTAGTATGATGCCGGCAATTCCTGATCCTTCTCATGGAGAACCATTATTCAGGAGCAATAATCGGCATCCACGGGCTATTGCAGGCTTTGTTCCTCAGACAAATTTTGTTTCTGATTACCCAAACTTCTTTCCTAGGGGGAATTTAGCTCTCCATCCTCGTGGTAATGGTCACTACCAAAACAATCGTGGGGGAAAGCAGCGTGATCAAGATCGCGGAGTATATTCTAATGCTCGAGATGCTCACTTTCGGCAGCACAGGCCCCCTACTAGAGGCTTGATGCCCCCTACGCCACCTTACACTGCTCAGTTTCCCCAGCCTGTTTTACCTTATGGGAATCCGATGCATCCTCCTGAGTTTGTCTATGTCCCTACATGGCCCTTAGAGACTTACAGAGGAATGCCTTTCATGCTACCGCCTTCAGTGTACTATTCTGCTGTTGATCCCACTCTATCTGCATCACTAGTTAAGCAGATTGAATATTATTTCTGTGACACGAATTTGATAATGGATGGATATCTAAGGTGCCGGATGGATGATCAAGGCTGGGTTCCAATTTCTCTGATAGCCAGTTTTTCTAGGGTAAAGAATTTGACGACCAATATTCAATGGATAATAGAATCCTTGAGAACGTCGACTGTATTGGAAGTGCAGGATAATAGGATCAGAAAGCGAAATGAGTGGAAGAAATGGATAATAAATTCCAATCAGCTTAGAACTGATTTGACCTCTTCTACTCCAAGTGGATCAGATCATGATAGTCTGGCAACTTCTTTTCAAGGAGTCAGATTGGATGAAGGTATAAACCAAAGTACGCCAAGCGACACCGATCCTCGTAATACCAAGAGTACTACCAAGATACAATCTTCTTCTGAGTCAGCTGATTCTTCACAACTTACTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGA 1446 46.96 MATVNHRSPSPTSFKGDNTYEFPPKNHLCAWAAVVRGEPELISQSPLSSSSSFSTVSAPETPETPAPAPTSDFFASSEEGGPVMGADSWPDLAESAKASPKLAGPTIVPPQRQATNNAKSDPSLKHPVVARQRSSRRSGGGGSSMGGPARGFYRPPPPPPPPFPVFQIPCSMMPAIPDPSHGEPLFRSNNRHPRAIAGFVPQTNFVSDYPNFFPRGNLALHPRGNGHYQNNRGGKQRDQDRGVYSNARDAHFRQHRPPTRGLMPPTPPYTAQFPQPVLPYGNPMHPPEFVYVPTWPLETYRGMPFMLPPSVYYSAVDPTLSASLVKQIEYYFCDTNLIMDGYLRCRMDDQGWVPISLIASFSRVKNLTTNIQWIIESLRTSTVLEVQDNRIRKRNEWKKWIINSNQLRTDLTSSTPSGSDHDSLATSFQGVRLDEGINQSTPSDTDPRNTKSTTKIQSSSESADSSQLTNGEVNQDVQTDI 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12768388 12773070 - CmaCh01G019850.1 Cma01g01985 287678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01985 481 SMART la 318 396 IPR006630 -
Cma01g01985 481 MobiDBLite consensus disorder prediction 1 20 - -
Cma01g01985 481 PANTHER LA-RELATED PROTEIN 1B 44 465 - -
Cma01g01985 481 Pfam La domain 324 379 IPR006630 -
Cma01g01985 481 MobiDBLite consensus disorder prediction 218 241 - -
Cma01g01985 481 MobiDBLite consensus disorder prediction 1 19 - -
Cma01g01985 481 MobiDBLite consensus disorder prediction 431 481 - -
Cma01g01985 481 PANTHER LUPUS LA PROTEIN-RELATED 44 465 IPR045180 -
Cma01g01985 481 MobiDBLite consensus disorder prediction 41 162 - -
Cma01g01985 481 SUPERFAMILY Winged helix DNA-binding domain 314 404 IPR036390 -
Cma01g01985 481 ProSiteProfiles La-type HTH domain profile. 314 403 IPR006630 -
Cma01g01985 481 CDD LAM 324 393 - -
Cma01g01985 481 MobiDBLite consensus disorder prediction 42 61 - -
Cma01g01985 481 Gene3D - 313 405 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01985 K18757 LARP1; la-related protein 1 - csv:101220887 572.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01985 Cma-Chr1:12768388 Cma03g00664 Cma-Chr3:5557230 4.49E-47 dispersed
Cma01g01985 Cma-Chr1:12768388 Cma03g00662 Cma-Chr3:5549751 8.33E-53 wgd
Cma01g01985 Cma-Chr1:12768388 Cma07g00410 Cma-Chr7:1773500 1.66E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01985 Cma_Chr01 FPKM 14.528275 14.301418 12.545439 12.30189 12.41566 11.055304 13.746456 15.367332 16.172865 14.536633