Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01986 ATGGCGCAAACGACGCCGAATCACACACAGACGGTCTCCGGTTGGGCAGCTCACGATTCTTCCGGCAAGCTCACACCGTACACTTTCAAACGCAGGGAGAATGGTCCAGACGATGTGACGATAGATATTTTGTACTGTGGAATATGCCATACCGATCTTCACTATGCCAAAAACGAGTGGGGCATCACCATGTATCCTGTAGTTCCCGGGCACGAAATGACAGGTGTGATTTCGAAGGTGGGAAGCAACGTGAAGAAGTTCAAAATAGGGGATAGAGTAGGAGTGGGATGTATAGCCGCTTCGTGTTTGAGCTGTGAGTTCTGCCAAGATTCACAAGAGAATTACTGTGAAAAATTGCAGTTTACATACAATGGAATCTTCTGGGATGGGAGCATAACTTATGGCGGATACTCCAAAATGTTTGTTTCAGATCAGAGGTACGTGGTGCACATCCCGGAGAGCCTGCCGATGGACGCTGCGGCGCCGTTGCTGTGCGCTGGGATTACAGTGTTCACGCCCATGAAAGACATGGATCTGATCCACTCACCGAGGAAGAAGGTGGGAGTGGTGGGTCTTGGTGGGCTTGGCCACATAGCTGTCAAATTTGGGAAGGCGTTTGGCCACCATGTGACTGTCATCAGCACCTCCGCTTCCAAGGAGAAAGAAGCTAAAGAACGCCTTGGCGCCGACGAGTTCATAGTCAGTAAAGATCCTCAACAAATGCAGAGGCACAGGAGGACGTTGGATTTTGTATTGGACACTGTGTCGGCAGAGCATTGTATTGGACCAATCTTGGAACTGCTAAAAGTGAATGGGACATTGTCCATTGTGGGGGCCCCAGACAAGCCCATTCAACTGCCCTCCTTCCCTTTAATCTTTGGAAAAAGGACTGTGAAAGGAAGCATTATAGGTGGAATACAAGAAACTCAGGAAATGATGGATTTGTGTGGGAAGTACAACATCACTAGTGATATTGAGGTGGTAAAGCCCGACGACATCAACCATGCTATGGAACGTCTCACTAAGAACGATGTTCGATATCGATTCGTCATTGACATTGCCCAAAATAATACTAAGTTGTAA 1083 47.92 MAQTTPNHTQTVSGWAAHDSSGKLTPYTFKRRENGPDDVTIDILYCGICHTDLHYAKNEWGITMYPVVPGHEMTGVISKVGSNVKKFKIGDRVGVGCIAASCLSCEFCQDSQENYCEKLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDAAAPLLCAGITVFTPMKDMDLIHSPRKKVGVVGLGGLGHIAVKFGKAFGHHVTVISTSASKEKEAKERLGADEFIVSKDPQQMQRHRRTLDFVLDTVSAEHCIGPILELLKVNGTLSIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYNITSDIEVVKPDDINHAMERLTKNDVRYRFVIDIAQNNTKL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12775567 12777637 + CmaCh01G019860.1 Cma01g01986 287679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01986 360 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Cma01g01986 360 PANTHER ALDEHYDE REDUCTASE 1 356 - -
Cma01g01986 360 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 1 356 - -
Cma01g01986 360 Pfam Alcohol dehydrogenase GroES-like domain 36 150 IPR013154 -
Cma01g01986 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
Cma01g01986 360 Gene3D - 15 353 - -
Cma01g01986 360 SUPERFAMILY GroES-like 17 177 IPR011032 -
Cma01g01986 360 CDD CAD1 14 352 - -
Cma01g01986 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Cma01g01986 360 Gene3D - 166 323 - -
Cma01g01986 360 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01986 Cma-Chr1:12775567 Cma20g01080 Cma-Chr20:8298392 3.84E-142 dispersed
Cma01g01986 Cma-Chr1:12775567 Cma02g00585 Cma-Chr2:3436313 9.41E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01986 K00083 - csv:101213170 665.996