Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01992 ATGGCTATGGACGATACTGAGAGCTGTTGTAGTAGACCGGTGGATGATTTTTCGACTCAGACCTGGAGACAGAAGCAGAAGGTTGGTGTTTACGTCGAAGTTCTTCGTCGACTCAGACTGTCGCATGAGGCGGAGACCAGCTTTCCTGGTTTTGAGGATGAACTTTGGGCTCATTTTCATCGCCTTCCTACTAGGTATGCTATGGACGTCAACGTGGAGAGGGCTCAAGATGTTCTCATGCACAAAAATCTTCTCTTCATGGCACATGATTCTGCTACTCGTCCTGCAATTGATGTCCGTCTCGTACAGGTTCATTCATCTCCTGGCACAAACTCTGGCAACTATGTACATTCAAACTTGAAGGAAAAAGTGGACCAGCGGTTTTCTGATTATGACAGCAATCAGAGGCATGATGCCCACGCTCTTTTTCTCAAGCAAGATTCGAATGCTTTCAGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTACTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCGCATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAACAGCTAAAGGATATACTAGCTGAAGAAATATCAAAGATTCAGAAAAGACATCCTCTATTTACACCTTGGAGCATTTCCCCAACTGGGAAGAAAGACAAAATTGGAGTCAAATTCATCACAAATTATGTCAACATTCCACGTCACAAAGTTGGTGCATGGGAAATTGATGCGAGTCTGTTAATCTATGAGAAGAAAATTGTTTCTGGATCTTTTAGTGACTTGTATAAAGGCACTTTCTATGGTCAAGCGGTGGCTATTAAGCTTCTAAAAGATGGAAGCTTGAATGAGGCTGTACGGCGGGAATTTGCTCAAGAAATTCATATCATGAGAAATCTTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGACCTCCAAGCGCTTTTATTGTTACTGAATACATGCCTGGTGGAAGCATGCATGACTTCTTACATAAAAAAAAGGGCGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGATGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATCCATAGAGATCTCAAAGCTGCAAATCTTTTGTTGGACGAAGATGGGGTTGTCAAGGTTGCTGATTTTGGTGTTGCCAGAATGCAATCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCATAAAGCTGATGTTTACAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGGCAGCTGCCTTATGATAACCTAACTCCGTTACAAGCAGCAATGGGCGTGATCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGCATGCAAATCCAATGATCGTGGACTTGCTTGAGAGATGCTGGCGGCAGGATCCATCTTTGAGACCTGAATTTTCTGAAATTACGAAACTTTTGCAGCAAACCCTTAAATTACATAATAGAAAATTGCGGAGTGGCAGGGCTCATCTGGAAGGCGGCCAAAATCTTGGGCAGGAGCAGAGCGTTTTATGGTGGAGCGAGGAGAATTCCTGCGACATCGAAGAACTTGAAGCCTGCGATCAAGAAGAAAGTAAACGAGATGGGGCATCGCCACATTTCATGGTACTCTTTCTTGTTGCAGTGGTATATGCAACCATAAAAAGTGAACAGTTGATAGCTTTCTGA 1806 42.91 MAMDDTESCCSRPVDDFSTQTWRQKQKVGVYVEVLRRLRLSHEAETSFPGFEDELWAHFHRLPTRYAMDVNVERAQDVLMHKNLLFMAHDSATRPAIDVRLVQVHSSPGTNSGNYVHSNLKEKVDQRFSDYDSNQRHDAHALFLKQDSNAFRPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRHPLFTPWSISPTGKKDKIGVKFITNYVNIPRHKVGAWEIDASLLIYEKKIVSGSFSDLYKGTFYGQAVAIKLLKDGSLNEAVRREFAQEIHIMRNLRHKNVVQFIGASTRPPSAFIVTEYMPGGSMHDFLHKKKGVLSFPSLLRVAVDVSKGMNYLHQKNIIHRDLKAANLLLDEDGVVKVADFGVARMQSQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGQLPYDNLTPLQAAMGVIQKGLRPKIPRHANPMIVDLLERCWRQDPSLRPEFSEITKLLQQTLKLHNRKLRSGRAHLEGGQNLGQEQSVLWWSEENSCDIEELEACDQEESKRDGASPHFMVLFLVAVVYATIKSEQLIAF 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12796667 12804432 + CmaCh01G019920.1 Cma01g01992 287685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01992 601 Gene3D Phosphorylase Kinase; domain 1 263 347 - -
Cma01g01992 601 Gene3D - 154 227 - -
Cma01g01992 601 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 530 - -
Cma01g01992 601 SUPERFAMILY Protein kinase-like (PK-like) 250 518 IPR011009 -
Cma01g01992 601 Pfam Protein tyrosine and serine/threonine kinase 272 519 IPR001245 GO:0004672|GO:0006468
Cma01g01992 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Cma01g01992 601 Gene3D Transferase(Phosphotransferase) domain 1 348 574 - -
Cma01g01992 601 SMART serkin_6 270 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01992 601 PRINTS Tyrosine kinase catalytic domain signature 344 357 IPR001245 GO:0004672|GO:0006468
Cma01g01992 601 PRINTS Tyrosine kinase catalytic domain signature 427 437 IPR001245 GO:0004672|GO:0006468
Cma01g01992 601 PRINTS Tyrosine kinase catalytic domain signature 446 468 IPR001245 GO:0004672|GO:0006468
Cma01g01992 601 PRINTS Tyrosine kinase catalytic domain signature 490 512 IPR001245 GO:0004672|GO:0006468
Cma01g01992 601 PRINTS Tyrosine kinase catalytic domain signature 381 399 IPR001245 GO:0004672|GO:0006468
Cma01g01992 601 ProSiteProfiles ACT domain profile. 156 233 IPR002912 -
Cma01g01992 601 SUPERFAMILY ACT-like 154 221 IPR045865 -
Cma01g01992 601 CDD STKc_MAP3K-like 278 519 - -
Cma01g01992 601 Coils Coil 206 226 - -
Cma01g01992 601 ProSiteProfiles Protein kinase domain profile. 270 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01992 601 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE 12 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01992 Cma-Chr1:12796667 Cma11g01359 Cma-Chr11:8997615 0 dispersed
Cma06g01365 Cma-Chr6:8921012 Cma01g01992 Cma-Chr1:12796667 2.59E-22 dispersed
Cma09g00361 Cma-Chr9:1485295 Cma01g01992 Cma-Chr1:12796667 6.18E-49 dispersed
Cma01g01992 Cma-Chr1:12796667 Cma19g00758 Cma-Chr19:7517998 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68305 PF07714 PK_Tyr_Ser-Thr 4.90E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01992 - - cpep:111789352 997.653