Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01993 ATGTCAACGCCGGCGAGGACCAAGAGCTGGAATGGCGGCGTGGATAAGCATTACCCACCGGCGCTGGCCTCCCATGATGAAGTTATTTCTGACCCCATTGTGTTTTGGGACACTTTGAGGCGTTTTCATTTTGTGATGAACACCAAGTTCATGATTCCTGTGATCGGAGGGAAGGAGCTAGACTTGCATGTTTTGTATTCAGAGGTTACAAGGAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTATATTTAAGTTTTCTCCTACGACCACAAGTGCTTCGTTTGTATTGAGAAAACACTATCTAAGTCTTCTGTACCATTATGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGCCCCTCAAGCGCCATTATCTTTTGGTAGCCCTACGAGGGACAGCGAATTGGCTATGGTGGAATATACTCCCAAGACAACGTCGTTTTCGCCTGCGGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTAGTGACTGTGAAATTGGGGTCCGAGGTTCTTAGAGGAGTACTTTACCATCCAGATCAGCCAGTCCCGTCTAATCTACGGCCTCAGTCTACAAATGCCATTATACCTTACACTGGTGGCAGACAGAGACACGCTGGTCGACGACACCGGAGACGCCGGAGAAAGGCAGACCCTAACCACCCAAAACCGAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAAACTAAGTCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAGATGAGGCAGGCAACTGCTGATATTCAGGCGACTAAATATTCAAAACATGGAGAGTAA 969 46.85 MSTPARTKSWNGGVDKHYPPALASHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSNLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATADIQATKYSKHGE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12805284 12807343 - CmaCh01G019930.1 Cma01g01993 287686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01993 322 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Cma01g01993 322 Gene3D - 24 126 IPR036431 GO:0003677
Cma01g01993 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 235 302 IPR009071 -
Cma01g01993 322 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Cma01g01993 322 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Cma01g01993 322 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
Cma01g01993 322 CDD HMGB-UBF_HMG-box 235 299 - -
Cma01g01993 322 SMART ARID_2 26 116 - -
Cma01g01993 322 MobiDBLite consensus disorder prediction 216 233 - -
Cma01g01993 322 Pfam HMG (high mobility group) box 235 302 IPR009071 -
Cma01g01993 322 Gene3D High mobility group box domain 219 315 IPR036910 -
Cma01g01993 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 314 - -
Cma01g01993 322 SUPERFAMILY HMG-box 232 307 IPR036910 -
Cma01g01993 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 314 - -
Cma01g01993 322 SMART hmgende2 234 303 IPR009071 -
Cma01g01993 322 MobiDBLite consensus disorder prediction 194 241 - -
Cma01g01993 322 SMART bright_3 30 121 IPR001606 GO:0003677
Cma01g01993 322 Coils Coil 291 318 - -
Cma01g01993 322 MobiDBLite consensus disorder prediction 197 211 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01993 Cma09g00079 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01993 Cma-Chr1:12805284 Cma08g01025 Cma-Chr8:6405677 1.37E-90 dispersed
Cma01g01993 Cma-Chr1:12805284 Cma09g00079 Cma-Chr9:350994 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34386 PF01388 ARID 6.00E-18 CL0123 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01993 - - csv:101219101 559.681