Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01993 ATGTCAACGCCGGCGAGGACCAAGAGCTGGAATGGCGGCGTGGATAAGCATTACCCACCGGCGCTGGCCTCCCATGATGAAGTTATTTCTGACCCCATTGTGTTTTGGGACACTTTGAGGCGTTTTCATTTTGTGATGAACACCAAGTTCATGATTCCTGTGATCGGAGGGAAGGAGCTAGACTTGCATGTTTTGTATTCAGAGGTTACAAGGAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTATATTTAAGTTTTCTCCTACGACCACAAGTGCTTCGTTTGTATTGAGAAAACACTATCTAAGTCTTCTGTACCATTATGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGCCCCTCAAGCGCCATTATCTTTTGGTAGCCCTACGAGGGACAGCGAATTGGCTATGGTGGAATATACTCCCAAGACAACGTCGTTTTCGCCTGCGGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTAGTGACTGTGAAATTGGGGTCCGAGGTTCTTAGAGGAGTACTTTACCATCCAGATCAGCCAGTCCCGTCTAATCTACGGCCTCAGTCTACAAATGCCATTATACCTTACACTGGTGGCAGACAGAGACACGCTGGTCGACGACACCGGAGACGCCGGAGAAAGGCAGACCCTAACCACCCAAAACCGAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAAACTAAGTCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAGATGAGGCAGGCAACTGCTGATATTCAGGCGACTAAATATTCAAAACATGGAGAGTAA 969 46.85 MSTPARTKSWNGGVDKHYPPALASHDEVISDPIVFWDTLRRFHFVMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGIFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICAPQAPLSFGSPTRDSELAMVEYTPKTTSFSPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPVPSNLRPQSTNAIIPYTGGRQRHAGRRHRRRRRKADPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATADIQATKYSKHGE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12805284 12807343 - CmaCh01G019930.1 Cma01g01993 287686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01993 322 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Cma01g01993 322 Gene3D - 24 126 IPR036431 GO:0003677
Cma01g01993 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 235 302 IPR009071 -
Cma01g01993 322 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Cma01g01993 322 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Cma01g01993 322 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
Cma01g01993 322 CDD HMGB-UBF_HMG-box 235 299 - -
Cma01g01993 322 SMART ARID_2 26 116 - -
Cma01g01993 322 MobiDBLite consensus disorder prediction 216 233 - -
Cma01g01993 322 Pfam HMG (high mobility group) box 235 302 IPR009071 -
Cma01g01993 322 Gene3D High mobility group box domain 219 315 IPR036910 -
Cma01g01993 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 314 - -
Cma01g01993 322 SUPERFAMILY HMG-box 232 307 IPR036910 -
Cma01g01993 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 314 - -
Cma01g01993 322 SMART hmgende2 234 303 IPR009071 -
Cma01g01993 322 MobiDBLite consensus disorder prediction 194 241 - -
Cma01g01993 322 SMART bright_3 30 121 IPR001606 GO:0003677
Cma01g01993 322 Coils Coil 291 318 - -
Cma01g01993 322 MobiDBLite consensus disorder prediction 197 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01993 - - - csv:101219101 559.681
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01993 Cma09g00079 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01993 Cma-Chr1:12805284 Cma08g01025 Cma-Chr8:6405677 1.37E-90 dispersed
Cma01g01993 Cma-Chr1:12805284 Cma09g00079 Cma-Chr9:350994 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00095 . 1 358 ARID Transcription Factor Family AT1G04880 56.8 2.5e-106 383.3
Cma08g01025 . 60 399 ARID Transcription Factor Family AT1G04880 60.3 1.2e-105 380.9
Cma01g02043 . 141 420 ARID Transcription Factor Family AT1G20910 67.5 2.2e-103 373.2
Cma16g01291 . 163 432 ARID Transcription Factor Family AT1G20910 60.3 2.7e-88 323.2
Cma09g00079 CST 16 315 ARID Transcription Factor Family AT1G76110 67.0 1.3e-112 403.7
Cma01g01993 CST 16 312 ARID Transcription Factor Family AT1G76110 65.3 3.6e-110 395.6
Cma01g02043 . 140 450 ARID Transcription Factor Family AT1G76510 72.8 1.6e-126 450.3
Cma16g01291 . 154 462 ARID Transcription Factor Family AT1G76510 61.6 8.2e-107 384.8
Cma01g00017 . 1 785 ARID Transcription Factor Family AT3G43240 58.4 6.1e-259 891.0
Cma14g01215 . 1 782 ARID Transcription Factor Family AT3G43240 57.9 6.1e-259 891.0
Cma17g00656 . 2 771 ARID Transcription Factor Family AT3G43240 56.9 1.3e-253 873.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34386 PF01388 ARID 6.00E-18 CL0123 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01993 Cma_Chr01 FPKM 1.440188 2.210266 1.909425 0.987455 2.666229 3.388848 3.60553 0.0 0.0 0.0