Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01996 ATGGCGGTCGATAAACTTCTGAAAGATGAAGCGAGCGAAGAGAAGGGAGAGCGTGCTAGAATGGCATCATTTATTGGTGCTATGGCGATTGCTGATTTGGTTAAGACAACATTAGGACCAAAGGGGATGGATAAAATTCTCCAATCTACTGGCAGAGGAAGGCAAGTCACTGTCACCAATGATGGTGCCACCATTTTAAAGTCTCTCCATATCGATAATCCAGCTGCCAAAGTGCTTGTTGGTATCCTTTATTTTACTATTTACCATGTTTATGATAGAGGCAATTTCATGATTATTGTAGTTGCGGAAGACATTTCAAAAGTTCAAGATGATGAAGTGGGTGATGGCACAACCTCAGTTGTTGTTTTGGCTGGAGAACTTCTAAGGGAAGCAGAGAAGTTGGTTGCTTCAAAGATTCATCCAATGACAATTATAGCAGGTTATAGAATGGCTGCAGAATGTGCTCGTAATGCATTGCTGCAGAAAGTGGTGGATAACAAAGCAGATTTAGAGAAATTTAAATCAGACTTGATGAAGATTGCAATGACTACTCTGAGTTCCAAAATTCTATCACAAGACAAGGAACATTTTGCTCAATTGGCAGTGGATGCCGTTATGAGGCTAAAGGGGAGCACAAACTTGGAGTCAATTCAAATCATCAAGAAACCTGGAGGATCATTGAAGGATTCCTTTTTAGATGAAGGGTTTATTCTTGACAAAAAAATTGGTATTGGCCAACCCAAGCGCATAGAGAATGCCAAAATTTTAGTGGCAAATACTGCTATGGACACCGACAAAGTCAAGATTTATGGTGCTCGAGTACGTGTTGATTCAATGGCAAGAGTGGCTGAAATTGAGGGTGCTGAAAAGGACAAAATGAGAGAGAAGGTGAAGAAGATAATTGGTCATGGAATCAACTGCTTTGTTAACAGACAGTTGATCTACAATTTCCCGGAGGAACTATTTGCAGATGCAGGAATACTTGCCATTGAGCATGCTGATTTTGATGGCATAGAGCGCCTGGCTTTAGTAACTGGTGGTGAGATTGCTTCAACTTTTGACAATCCGGAATCTGTGAAGCTTGGACATTGCAAGTTGATTGAGGAGATTATGATTGGCGAGGACAAACTGATCCATTTTTCTGGTGTGGGAATGGGTCAAGCGTGTACAATTGTGCTAAGGGGTGCAAGTCATCACGTCCTTGATGAGGCTGAAAGGTCTCTGCATGATGCCTTGTGTGTACTGTCTCAGACAGTCAATGACAGCAGAGTCCTGCTTGGAGGTGGATGGCCCGAGATGATTATGTCAAAAGAAGTAGATGAGTTGGCTAGGAAGACTCCTGGGAAGAAATCACACGCCATTGAAGCTTTTTCACGTGCTCTACAGGCTATTCCAACAATCATTGCTGATAATGCTGGGTTGGATAGTGCTGACTTGATTGCACAGCTCCGGGCTGAGCATCACAAGGAAGGTTGCAATGCAGGGATCGACGTCATCTCTGGTTCGGTAGGGGATATGGCTGAACTTGGTATCTCAGAAGCTTTCAAAGTGAAGCAAGCCGTATTGCTTTCTGCAACGGAGGCTGCTGAGATGATTCTTAGAGTTGATGAAATCATCACATGTGCCCCTAGGAGGAGAGAAGATAGAATGTGA 1653 43.01 MAVDKLLKDEASEEKGERARMASFIGAMAIADLVKTTLGPKGMDKILQSTGRGRQVTVTNDGATILKSLHIDNPAAKVLVGILYFTIYHVYDRGNFMIIVVAEDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMAAECARNALLQKVVDNKADLEKFKSDLMKIAMTTLSSKILSQDKEHFAQLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAEIEGAEKDKMREKVKKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVGMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMIMSKEVDELARKTPGKKSHAIEAFSRALQAIPTIIADNAGLDSADLIAQLRAEHHKEGCNAGIDVISGSVGDMAELGISEAFKVKQAVLLSATEAAEMILRVDEIITCAPRRREDRM 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12826363 12831312 - CmaCh01G019960.1 Cma01g01996 287689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01996 550 PANTHER BNAA02G05110D PROTEIN 101 548 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Cma01g01996 550 Gene3D GroEL 234 386 IPR027409 -
Cma01g01996 550 Pfam TCP-1/cpn60 chaperonin family 30 540 IPR002423 GO:0005524
Cma01g01996 550 PRINTS Tailless complex polypeptide 1 (chaperone) signature 32 48 IPR017998 GO:0140662
Cma01g01996 550 PRINTS Tailless complex polypeptide 1 (chaperone) signature 56 74 IPR017998 GO:0140662
Cma01g01996 550 PRINTS Tailless complex polypeptide 1 (chaperone) signature 424 436 IPR017998 GO:0140662
Cma01g01996 550 PRINTS Tailless complex polypeptide 1 (chaperone) signature 390 412 IPR017998 GO:0140662
Cma01g01996 550 ProSitePatterns Chaperonins TCP-1 signature 2. 58 74 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma01g01996 550 PANTHER CHAPERONIN 5 90 IPR017998 GO:0140662
Cma01g01996 550 PANTHER CHAPERONIN 101 548 IPR017998 GO:0140662
Cma01g01996 550 CDD TCP1_beta 7 545 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Cma01g01996 550 PANTHER BNAA02G05110D PROTEIN 5 90 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Cma01g01996 550 Gene3D - 165 422 IPR027410 -
Cma01g01996 550 SUPERFAMILY GroEL-intermediate domain like 175 422 IPR027410 -
Cma01g01996 550 SUPERFAMILY GroEL apical domain-like 229 395 IPR027409 -
Cma01g01996 550 Gene3D - 27 539 IPR027413 -
Cma01g01996 550 ProSitePatterns Chaperonins TCP-1 signature 1. 35 47 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma01g01996 550 SUPERFAMILY GroEL equatorial domain-like 13 542 IPR027413 -
Cma01g01996 550 ProSitePatterns Chaperonins TCP-1 signature 3. 109 117 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cma01g01996 550 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 101 546 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01996 K09494 CCT2; T-complex protein 1 subunit beta - csv:101206611 986.097
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01996 Cma-Chr1:12826363 Cma13g00071 Cma-Chr13:561448 0 dispersed
Cma01g01996 Cma-Chr1:12826363 Cma10g00986 Cma-Chr10:5109797 9.46E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g138 Blo01g01618 . . . Bpe02g00326 . . Bma01g02393 . . Cma01g01996 . Car01g01568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00955 . . . . . . Cmo01g02057 . . . . . . Cpe02g00049 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005792 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 3 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01996 Cma_Chr01 FPKM 48.251354 48.801788 49.09473 53.94875 68.619156 71.681648 68.670082 62.103222 61.89983 64.33709