Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02002 ATGGCGGAACACGGCGGCGAAATAGATCCAAGAAGCGGGTTCTGCAAATCCACCAAAATCTTCCACAGCAAGCGCCACCCAATCCCTCTCCCCCCGAACCAATCACTCGATGCGACGACCTTCATCTCTTCCCGCCCTCACAACGGAAAAATCGCCCTCATCGACGCCACCACCGGCCAACACATCACCTATTCCCACCTCTGGGAATCCCTCGATTCCGTCGCCTCTGCTCTCTCCGACATGGGAATCCGGAAAGGCCACGTCATCCTCCTCCTCTCCCCTAACTCCATTTTCTTCCCCATCATTTGCCTCGCCGTCATGTCCATCGGCGCCATCATCACCACCACAAATCCCCTCAATACTCCCCAAGAAATCGCCAAGCAGATCGCCGATTCAAAACCCATTTTAGCTTTCACAACCCAACAATTACTCCCCAAAATCGCCAGCTCCACATTGCCAATCGTCCTTATTGACGGCCAAATTCAAACCCCCTCGGTCAAAATCGTGTCCACGTTGAACGAAATGATGAGGAAAAAACCCAGTGAGAGTAGAATCAAAGAACGGGTTGAGCAAAACGACACAGCAACTCTGCTTTATTCGTCTGGAACGACAGGGGCGAGCAAGGGCGTAGTGTCGTCTCATAAAAATTTAATTGCGATGGTTCAGGTGGTTGTGACGAGGTTCAGATTAAGCGAAGGGGAAGGGACTTTTATCTGTACGGTTCCGATGTTTCATATCTATGGACTCGTGGCCTTCGCGACGGGGCTGCTGTCTTCAGGATCCACGATCATCGTGTTGTCCAAATTCGAAATTCATGAGATGTTGTCTGCGATTGAGAAGTACAGGGCAACGTATCTGCCACTTGTGCCCCCGATTCTAGTGGCGCTAGTGAACGCCGCCGAGCAGATAAAGGGCAAGTACGATTTGAGCTCCTTGCACACGGCGTTGTCCGGCGGAGCGCCGCTGGGGAAGGAGGTCATTGAGGGTTTTGTTGAGAAATATCCGAACGTTGCGATTCTTCAGGGGTATGGGTTGACGGAGTCCACCGGAATAGGAGCTTCCACTGATTCTCTGGAGGAGAGCCGCCGGTATGGCACGGCGGGGCTTTTGTCTCCGAGCACCGAGGCAATGATTGTTGACCCGGAAACTGGCGAGGCTCTGCCCGTGAACCGGACCGGAGAGCTTTGGCTCAGAGGACCCACCGTTATGAAAGGGTATTTTGGTAATGTGGAGGCCACAGCCTCAACGCTCGACTCGATGGGATGGTTGAGAACAGGCGATCTGTGTTACATCGATGAAGATGGTTTTATTTTTGTGGTTGATAGGCTCAAAGAACTCATCAAATACAAGGGTTATCAGGTGCCTCCAGCAGAATTAGAGGCGTTGTTACTTGCACATCCTAATATCTCTGATGCAGCTGTGATTCCTTTTCCAGACAAGGAGGTTGGGCAGTATCCAATGGCTTACGTGGTAAGAAAGGGTGGAAGTGACATTTCACATGAAGATGTAATGCAATTCGTGGCAAAACAGGTGGCGCCGTACAAGAGAATCCGACGGGTGGCTTTCGTGGATTCCATTCCCAAAAATCCGTCCGGTAAGATTTTGAGAAAGGATCTCATAAAGCTTGCAACCTCTAGACTCTGA 1644 51.16 MAEHGGEIDPRSGFCKSTKIFHSKRHPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQHITYSHLWESLDSVASALSDMGIRKGHVILLLSPNSIFFPIICLAVMSIGAIITTTNPLNTPQEIAKQIADSKPILAFTTQQLLPKIASSTLPIVLIDGQIQTPSVKIVSTLNEMMRKKPSESRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFRLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIIVLSKFEIHEMLSAIEKYRATYLPLVPPILVALVNAAEQIKGKYDLSSLHTALSGGAPLGKEVIEGFVEKYPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEAMIVDPETGEALPVNRTGELWLRGPTVMKGYFGNVEATASTLDSMGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLAHPNISDAAVIPFPDKEVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRIRRVAFVDSIPKNPSGKILRKDLIKLATSRL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12847571 12850663 - CmaCh01G020020.1 Cma01g02002 287695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02002 547 SUPERFAMILY Acetyl-CoA synthetase-like 41 545 - -
Cma01g02002 547 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Cma01g02002 547 PANTHER 4-COUMARATE--COA LIGASE-LIKE 3-RELATED 9 546 - -
Cma01g02002 547 Gene3D - 445 546 IPR045851 -
Cma01g02002 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 546 - -
Cma01g02002 547 Pfam AMP-binding enzyme 47 449 IPR000873 -
Cma01g02002 547 CDD 4CL 30 539 - -
Cma01g02002 547 Gene3D - 18 444 IPR042099 -
Cma01g02002 547 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02002 Cma09g00069 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02002 Cma-Chr1:12847571 Cma18g00222 Cma-Chr18:1201248 6.73E-172 dispersed
Cma15g01097 Cma-Chr15:6987825 Cma01g02002 Cma-Chr1:12847571 3.85E-62 dispersed
Cma01g02002 Cma-Chr1:12847571 Cma09g00069 Cma-Chr9:298453 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02002 K10526 - csv:101221396 976.852