Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02004 ATGGGCTGTTGCCTATCTTCCATGCTTCAACTGAAAAAACCTTCTGCCGATGACGATGGCCGTGGCCATGCCCATGCCAATAATTCTATTCACCAGAACCACCACCATCAGAATGAAGTAGAAGCCGCCCCGCCGACGGATGATTGCGCGCCCTCGTTCCTTGAGTTTTCGTTCGCCGACCTCAAGGCGGCGACTAACAACTTCAGCTCCGATCATATTGTATCGGAAATCTGCGATAAAGCTTCTAATGTCGTTTACAGGGGGCGTCTCCAGGCAGAGAATAACCTAGGGTGCATTGCTGTTAAAAAATTCAGCAAAGCTGCGTGGCCGGACGCCAAACAGTTTGCCGCGGAAGCCTATGGTGTGGGGAAATTGAGAAACAAAACACTCGCCAATTTAATCGGGTTTTGCTGCGAGGGCGACGAAAGGCTGCTTGTTGCGGAATACATGCCCAATTGCACCCTTGCAAAGCACTTGTTCCACTGGGAGAAACAAACCATTGAGTGGGCAATGCGTTTAAGAGTTGCTCTATGCATTGCTGAAGCACTAGAATATTGCAGTCAAGCAGCACGTCCATTATACCACGACTTGAATGCAGACAGAGTTCTATTTGACGAGGACGGCGATCCTCGGCTATCGTGTTTTGGGTTGATGAAAAACAGCATGGATGGGAAGAGCTACAGCACTAATCTTGCTTATACACCTCCAGAGTATCTAAAAGATGGAACTGTAATTCCTGAAAGCGTTATCTATAGCTTTGGGACTATCCTGTTAGATCTTCTTAGTGGAAAGCATGTCCCTCCAAATCAAGCACTTGATATGATAGGAGGTAAAAGCATTAGTCTGTTGATGGACTCACATTTAGAGGGGAGGTTTTCAACTGAAGAGGCGACTTTAGTGTTTGAGCTTGCTTCGCAGTGCTTGCAATATGAACCAATGGATCGACCAAGTATTGAAGAGCTTGTTGCAGCACTCGTCCCCCTCCAAAACAAGTCTGATATTCCATCATATGAAATGCTGGGCATCCCAAAACAAGAGCGAATACCGTTGGTGTCGCAACAGCCTCTATCTCAAATGGGTGATGCTTGTGCTCGAGTGGACCTTACAGCCATTCATCAGCTTTTGCTACTGTCACACTATAAAGACGATGATGGATCCTACGAACTTTCCTTCCAAGAATGGACGCAACAGATAAGAGACATGTTGGAGGCACGCAAGCGAGGCGACATCGCATTTCGAGATAAAGATTTTGAAGGCGCAATAGATGGCTATACCACGTTCATTGATGTGGGCAATGTACTTTCTCCAACAGTCTACGCACGTAGAAGTATTTGTCATCTGCTGTGTGATCAGCCAGACTTTGCACTTAGAGATGCAATGCAAGCACAATTGATTCACCCTGAGTGGCACGTTGCATTTTACTTGCAGGCTGTTGCCCTTGTTAAGCTTGGAATGCCAAAGGATGCGGCTGACATGCTGAATGAAGCATGCACATTAGAGAAGAAAAGGCATAGAGGCAGAGCGTATTGA 1530 46.67 MGCCLSSMLQLKKPSADDDGRGHAHANNSIHQNHHHQNEVEAAPPTDDCAPSFLEFSFADLKAATNNFSSDHIVSEICDKASNVVYRGRLQAENNLGCIAVKKFSKAAWPDAKQFAAEAYGVGKLRNKTLANLIGFCCEGDERLLVAEYMPNCTLAKHLFHWEKQTIEWAMRLRVALCIAEALEYCSQAARPLYHDLNADRVLFDEDGDPRLSCFGLMKNSMDGKSYSTNLAYTPPEYLKDGTVIPESVIYSFGTILLDLLSGKHVPPNQALDMIGGKSISLLMDSHLEGRFSTEEATLVFELASQCLQYEPMDRPSIEELVAALVPLQNKSDIPSYEMLGIPKQERIPLVSQQPLSQMGDACARVDLTAIHQLLLLSHYKDDDGSYELSFQEWTQQIRDMLEARKRGDIAFRDKDFEGAIDGYTTFIDVGNVLSPTVYARRSICHLLCDQPDFALRDAMQAQLIHPEWHVAFYLQAVALVKLGMPKDAADMLNEACTLEKKRHRGRAY 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12853824 12856568 - CmaCh01G020040.1 Cma01g02004 287697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02004 509 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 507 IPR045845 GO:0004672|GO:0009742
Cma01g02004 509 SUPERFAMILY TPR-like 404 502 IPR011990 GO:0005515
Cma01g02004 509 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g02004 509 SUPERFAMILY Protein kinase-like (PK-like) 52 330 IPR011009 -
Cma01g02004 509 Pfam Protein tyrosine and serine/threonine kinase 83 325 IPR001245 GO:0004672|GO:0006468
Cma01g02004 509 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK11 1 507 - -
Cma01g02004 509 Gene3D Transferase(Phosphotransferase) domain 1 151 342 - -
Cma01g02004 509 Gene3D Tetratricopeptide repeat domain 395 507 IPR011990 GO:0005515
Cma01g02004 509 MobiDBLite consensus disorder prediction 13 45 - -
Cma01g02004 509 Gene3D Phosphorylase Kinase; domain 1 46 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02004 K14500 BSK; BR-signaling kinase [EC:2.7.11.1] - csv:101216425 861.677
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02004 Cma05g00992 CCT
Cma01g02004 Cma12g00667 CCT
Cma01g02004 Cma09g00065 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02004 Cma-Chr1:12853824 Cma20g00724 Cma-Chr20:3362270 0 dispersed
Cma01g02004 Cma-Chr1:12853824 Cma12g00667 Cma-Chr12:3581671 0 wgd
Cma01g02004 Cma-Chr1:12853824 Cma05g00992 Cma-Chr5:7957123 0 wgd
Cma01g02004 Cma-Chr1:12853824 Cma09g00065 Cma-Chr9:288745 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g122 . Blo12g00863 . Bda03g00310 Bpe02g00322 Bpe04g00271 Bma04g00277 Bma01g02396 Cmo05g01010 Cmo12g00606 Cma01g02004 Cma09g00065 Car01g01574 Car12g00648 . Cpe06g00032 Cpe07g00582 Bhi04g01558 . . . . . Lcy13g2248 Cla08g00963 . . . . . . Cone4ag2009 Cone7ag1925 Cone17ag1441 Cone20ag0036 Lsi04g01794 Csa04g02688 . Cme03g01357 . . Bda11g00958 . . . . . . Cmo01g02063 Cmo09g00065 Cma12g00667 Cma05g00992 Car05g00874 Car09g00057 Cpe11g00801 Cpe02g00044 Bhi09g02923 . . . . Mch11g0067 . Cla05g01573 Cam05g1682 . Cco05g1732 . . . Lsi08g00803 . Chy07g00379 Cme07g00068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000526 3 6 2 3 3 3 6 3 3 3 3 3 6 3 3 6 3 5 6 3 3 3 3 3 2 3 3 6 5 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68306 PF07714 PK_Tyr_Ser-Thr 2.20E-25 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02004 Cma_Chr01 FPKM 9.940486 11.011801 4.668079 5.268997 2.815385 3.415612 3.022456 2.424002 2.356585 2.605215