Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02010 ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTGTCCGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGTCAACTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCTCAGCTTGAGCATGTTTTCATCAGAGGAAGCAAAGTCAGGTTCATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAAAATTAAGGGTAAGGGTGCCTCACTTGGTGTTGGAAGGGGCAGGGCTGTTGCTATGCGAGCTAAGTACGAACATCCGCATACATGCTTGTGTGCATTTTTCCCATGTATGAGAGAAGGATATGATGGCTGCTTGTGTGCAAGAAGTATAGGATTTACTTTAGTTGACAGATTTCCAATAATTAACACTGCGGTGAACTCTGTTTTCTGTAGGCTCAAGCTGCTGGGCGTGGAGGTGCAACTGGTCGGGGTGCGGTGCCATCTGCCCGAAGGTGATGAAACCATGAATACAGGTTGTAATGTCCTCGGTTCAAGCCTCGATTGCCATTGGAATGTTGACCATCAGATTGACATCCCACACACTGAAGAAATACGCGTTATTCCATTTTGTTGA 663 47.21 MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKYEHPHTCLCAFFPCMREGYDGCLCARSIGFTLVDRFPIINTAVNSVFCRLKLLGVEVQLVGVRCHLPEGDETMNTGCNVLGSSLDCHWNVDHQIDIPHTEEIRVIPFC 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12875109 12877672 + CmaCh01G020100.1 Cma01g02010 287703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02010 220 Gene3D - 3 86 - -
Cma01g02010 220 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 114 IPR027141 GO:0006396
Cma01g02010 220 Pfam LSM domain 11 74 IPR001163 -
Cma01g02010 220 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SMD3A 1 114 - -
Cma01g02010 220 SMART Sm3 10 75 IPR001163 -
Cma01g02010 220 CDD Sm_D3 8 77 IPR034099 GO:0000387|GO:0005681
Cma01g02010 220 SUPERFAMILY Sm-like ribonucleoproteins 8 112 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02010 K11088 SNRPD3, SMD3; small nuclear ribonucleoprotein D3 - csv:101222727 221.476
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02010 Cma09g00059 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02010 Cma-Chr1:12875109 Cma09g01117 Cma-Chr9:6169813 1.45E-10 dispersed
Cma01g02010 Cma-Chr1:12875109 Cma09g00059 Cma-Chr9:262668 4.91E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g101 Blo01g01633 Blo12g00856 . Bda03g00317 Bpe02g00312 Bpe04g00278 Bma04g00285 Bma01g02407 . . Cma01g02010 Cma09g00059 Car01g01580 . . Cpe06g00026 . . . . . . . . . . . . . . . Cone4ag2016 Cone7ag1932 Cone17ag1450 Cone20ag0026 Lsi04g01802 Csa04g02696 . . . . Bda11g00968 . . . . . Sed08g2261 Cmo01g02068 Cmo09g00059 . . . Car09g00050 . Cpe02g00038 Bhi09g02896 Tan01g5100 Cmetu07g0611 . Hepe01g2336 . . Cla11g01819 Cam11g1885 Cec11g1910 Cco11g1917 Clacu11g2049 Cmu11g1854 Cre11g2259 . . Chy07g00387 Cme07g00060
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003457 2 1 2 2 2 0 2 1 0 1 1 1 2 1 1 2 0 4 2 1 1 3 1 1 1 1 0 2 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02010 Cma_Chr01 FPKM 31.956015 31.087509 25.211462 27.518641 44.785416 59.029217 42.300571 36.21917 39.899925 34.372658