Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02011 ATGGCTGGATCGGATGAGAACAACCCGGATGTGACCGGACGAGCAAATCTCCATGGGAGTTTACGAGTTGATGGCGGTGGCAAATTTATAGTGGGGGCGGGTCAAAACCGCAGAGCTTTGAGCAACATTAATGGCAATGTTAGAGGAGCTCCTCCTCCCCTTCATCCCTGTGCAGTCCTCAAAAGAGGCTTAACAGAAACTGATGCTGTTCTCAACTGTAAAGTTCCTCCCATTCCGATCCATCGACCGATTACTCGGAAGTTTGCAGCTCAGCTGGCCGACAAGCAGCAGCAACCTCTGCCTGAGGTTGATAGAAAGCCATTACAATCTTCTCCAACTCGAAAAGACTCAATAGATCATCACCCCATCACAGAGGAAGATGATTCTATGGACGAATCGGCAGTACCGATGTTCGTTCAACACACAAAAGCGATGTTGGATGAAATTGACAAAATGGAAGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTCATGGACATAGACAGCTGCGATAAGAAGAACCAGCTAGCTGTTGTGGAATACATTGATGACTTGTATGCTTGCTACAGGAGAGCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAGCAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAGTTTGAGCTGATGGAGGAGACATTGTACCTCACAATCAACCTGATCGATAGATTCTTGGCGGTTCAGTCGGTGGTGAGGAAGAAGCTCCAGCTTGTTGGAGTGACGGCGATGCTTATTGCCTGCAAGTACGAGGAGGTTTCTGTTCCTATTGTGGATGATCTTATTCTCATATCTGACAAGGCCTACAGCCGAAAAGAAATTTTGGACATGGAGAAGCTGATGGTAAACACCTTACAGTTCAATCTGTCTGTTCCAACACTTTATGTGTTCATGAGAAGGTTTCTCAAAGCTGCCCAATCTGATAGAGAGCTGGAGCTGCTGTCATTCTTCATGGTGGAGCTCTGTCTAGTGGAATATGAAATGCTGAAGTATAAACCTTCATTAATGGCTGCTGCTGCGGTCTTCACTGCTCAATGCACCATCAATGGCTTCAAGGAATGGAGCAAAACCAGTGAGTGGCACACTGGGTATTCTCAGGAGCAGCTTCTGGAATGTTCACGTTTGATGGTGGAGTTTCACGAGAAAGCAGGGACAGGAAAATTGACGGGAGTTCACAGGAAGTATAGCACATCCAAGTTCGGATATGCTGCAAGAAGTGAACCAGCAAGCTTTCTGTTGGAAGAAGAAAGGCCATAG 1320 46.52 MAGSDENNPDVTGRANLHGSLRVDGGGKFIVGAGQNRRALSNINGNVRGAPPPLHPCAVLKRGLTETDAVLNCKVPPIPIHRPITRKFAAQLADKQQQPLPEVDRKPLQSSPTRKDSIDHHPITEEDDSMDESAVPMFVQHTKAMLDEIDKMEEVEMEDIEEEPVMDIDSCDKKNQLAVVEYIDDLYACYRRAEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTINLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPIVDDLILISDKAYSRKEILDMEKLMVNTLQFNLSVPTLYVFMRRFLKAAQSDRELELLSFFMVELCLVEYEMLKYKPSLMAAAAVFTAQCTINGFKEWSKTSEWHTGYSQEQLLECSRLMVEFHEKAGTGKLTGVHRKYSTSKFGYAARSEPASFLLEEERP 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12878049 12881213 - CmaCh01G020110.1 Cma01g02011 287704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02011 439 PANTHER CYCLINS 25 431 IPR039361 -
Cma01g02011 439 Gene3D - 199 311 - -
Cma01g02011 439 PANTHER CYCLIN-B2-3-RELATED 25 431 - -
Cma01g02011 439 Pfam Cyclin, C-terminal domain 313 427 IPR004367 -
Cma01g02011 439 SUPERFAMILY Cyclin-like 312 430 IPR036915 -
Cma01g02011 439 SMART Cyclin_C_2 313 430 IPR004367 -
Cma01g02011 439 MobiDBLite consensus disorder prediction 1 24 - -
Cma01g02011 439 Gene3D - 185 424 - -
Cma01g02011 439 CDD CYCLIN 311 398 IPR013763 -
Cma01g02011 439 Pfam Cyclin, N-terminal domain 186 311 IPR006671 -
Cma01g02011 439 MobiDBLite consensus disorder prediction 108 128 - -
Cma01g02011 439 CDD CYCLIN 214 303 IPR013763 -
Cma01g02011 439 ProSitePatterns Cyclins signature. 215 246 IPR006671 -
Cma01g02011 439 SUPERFAMILY Cyclin-like 174 310 IPR036915 -
Cma01g02011 439 SMART cyclin_7 317 399 IPR013763 -
Cma01g02011 439 SMART cyclin_7 220 304 IPR013763 -
Cma01g02011 439 MobiDBLite consensus disorder prediction 92 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02011 Cma-Chr1:12878049 Cma07g01100 Cma-Chr7:5953674 1.06E-82 dispersed
Cma02g01292 Cma-Chr2:7574896 Cma01g02011 Cma-Chr1:12878049 7.48E-86 transposed
Cma19g01118 Cma-Chr19:9188299 Cma01g02011 Cma-Chr1:12878049 2.43E-75 transposed
Cma01g02011 Cma-Chr1:12878049 Cma03g00627 Cma-Chr3:5435253 4.58E-161 wgd
Cma01g02011 Cma-Chr1:12878049 Cma07g00387 Cma-Chr7:1663930 1.90E-166 wgd
Cma01g02011 Cma-Chr1:12878049 Cma09g00055 Cma-Chr9:252777 2.53E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02011 K21777 - csv:101223199 744.191