Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02016 ATGAGCTGCTTTTCTTGCATTCGTACTCGTTGTAATGACGCCAGCAAGGTCGAAATTGACAATGAAACTGGAAAAGGGAAGGAATCACAACCCAGAAGTGGAAACAACCGGAAATGTGGGGCTGCTCGAAGCTTCCCGTTTCGCGAATTGGCAACGGCGACGAGAGGTTTCAAGGAAGTGAACTTGATTGGTGAAGGCGGGTTTGGAAGAGTTTACAAAGGCCGATTAGAGTCAGGCCAGGTTGTTGCTATTAAGCAACTCAATCACGACGGTCTTCAAGGATTTCAGGAATTTATCGTCGAAGTTCTCATGTTAAGCCTATTGCATCACTGTAATCTTGTTACATTGATTGGTTACTGTACCGATGGAGACCAAAGGCTGTTGGTATACGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTCGGTTTGTCCCCCGAACGACCGTCATTGAGTTGGAACACTCGAATCAAAATTGCTCTTGGTGCAGCCCGGGGCCTTGAGTATCTTCACTGCACAGCCAATCCACCGGTTATCTACCGTGACTTGAAATCTGCAAATATCTTACTGGATGACGAGTTCAATCCAAAGCTCTCGGATTTCGGACTGGCAAAGTTAGGACCGGTCGGTGACAACACCCATGTTTCTACCAGAGTGATGGGAACATATGGTTATTGTGCTCCGGAGTATGCCATGAGCGGCAAACTTACTCTGAAATCTGATATCTATTGCTTTGGTGTGGTTCTCTTGGAGATAATTACAGGTAGGAAAGCAATAGACACCACCAAGAAACCTGGAGAGCAAAACCTGGTTGCTTGGTCTCGCCCGTTTATTAAAGACCGGAGGAAGTTTGTTCAATTAGTCGACCCACTACTAGAAGGATGCTACCCTGTTCGTTGTCTACACCACGCGATCGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAACATTCAGACCAATTATCAGTGATATCGTCGTGGCTCTTGAATACTTAGCTTCTCAGAGTTATGCATCAGAACAACCGAGAGACGGGGCGGCGCCTAATCCCTCCACACTATCTCCTCAACAAGACAGGAGTCATGGAAAGAGCTCTACATCCAAGTAA 1110 46.58 MSCFSCIRTRCNDASKVEIDNETGKGKESQPRSGNNRKCGAARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLESGQVVAIKQLNHDGLQGFQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLSPERPSLSWNTRIKIALGAARGLEYLHCTANPPVIYRDLKSANILLDDEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDTTKKPGEQNLVAWSRPFIKDRRKFVQLVDPLLEGCYPVRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSYASEQPRDGAAPNPSTLSPQQDRSHGKSSTSK 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12910712 12913482 - CmaCh01G020160.1 Cma01g02016 287709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02016 369 Gene3D Transferase(Phosphotransferase) domain 1 133 348 - -
Cma01g02016 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Cma01g02016 369 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Cma01g02016 369 Pfam Protein kinase domain 57 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g02016 369 ProSiteProfiles Protein kinase domain profile. 57 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g02016 369 MobiDBLite consensus disorder prediction 340 369 - -
Cma01g02016 369 CDD STKc_IRAK 63 331 - -
Cma01g02016 369 PANTHER OS07G0668900 PROTEIN 25 361 - -
Cma01g02016 369 PIRSF ILK 11 346 - -
Cma01g02016 369 Gene3D Phosphorylase Kinase; domain 1 28 132 - -
Cma01g02016 369 SMART serkin_6 57 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g02016 369 PANTHER OS07G0668900 PROTEIN 25 361 - -
Cma01g02016 369 MobiDBLite consensus disorder prediction 20 40 - -
Cma01g02016 369 SUPERFAMILY Protein kinase-like (PK-like) 38 331 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02016 Cma12g00680 CCT
Cma01g02016 Cma05g00975 CCT
Cma01g02016 Cma12g00680 ECH
Cma01g02016 Cma05g00975 ECH
Cma01g02016 Cma09g00051 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02016 Cma-Chr1:12910712 Cma06g01475 Cma-Chr6:9381522 2.56E-165 dispersed
Cma01g02016 Cma-Chr1:12910712 Cma12g00680 Cma-Chr12:3678680 0 wgd
Cma01g02016 Cma-Chr1:12910712 Cma05g00975 Cma-Chr5:7870534 0 wgd
Cma01g02016 Cma-Chr1:12910712 Cma09g00051 Cma-Chr9:217016 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68307 PF00069 Pkinase 1.90E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02016 - - csv:101203407 678.707