Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g02016 | ATGAGCTGCTTTTCTTGCATTCGTACTCGTTGTAATGACGCCAGCAAGGTCGAAATTGACAATGAAACTGGAAAAGGGAAGGAATCACAACCCAGAAGTGGAAACAACCGGAAATGTGGGGCTGCTCGAAGCTTCCCGTTTCGCGAATTGGCAACGGCGACGAGAGGTTTCAAGGAAGTGAACTTGATTGGTGAAGGCGGGTTTGGAAGAGTTTACAAAGGCCGATTAGAGTCAGGCCAGGTTGTTGCTATTAAGCAACTCAATCACGACGGTCTTCAAGGATTTCAGGAATTTATCGTCGAAGTTCTCATGTTAAGCCTATTGCATCACTGTAATCTTGTTACATTGATTGGTTACTGTACCGATGGAGACCAAAGGCTGTTGGTATACGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTCGGTTTGTCCCCCGAACGACCGTCATTGAGTTGGAACACTCGAATCAAAATTGCTCTTGGTGCAGCCCGGGGCCTTGAGTATCTTCACTGCACAGCCAATCCACCGGTTATCTACCGTGACTTGAAATCTGCAAATATCTTACTGGATGACGAGTTCAATCCAAAGCTCTCGGATTTCGGACTGGCAAAGTTAGGACCGGTCGGTGACAACACCCATGTTTCTACCAGAGTGATGGGAACATATGGTTATTGTGCTCCGGAGTATGCCATGAGCGGCAAACTTACTCTGAAATCTGATATCTATTGCTTTGGTGTGGTTCTCTTGGAGATAATTACAGGTAGGAAAGCAATAGACACCACCAAGAAACCTGGAGAGCAAAACCTGGTTGCTTGGTCTCGCCCGTTTATTAAAGACCGGAGGAAGTTTGTTCAATTAGTCGACCCACTACTAGAAGGATGCTACCCTGTTCGTTGTCTACACCACGCGATCGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAACATTCAGACCAATTATCAGTGATATCGTCGTGGCTCTTGAATACTTAGCTTCTCAGAGTTATGCATCAGAACAACCGAGAGACGGGGCGGCGCCTAATCCCTCCACACTATCTCCTCAACAAGACAGGAGTCATGGAAAGAGCTCTACATCCAAGTAA | 1110 | 46.58 | MSCFSCIRTRCNDASKVEIDNETGKGKESQPRSGNNRKCGAARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLESGQVVAIKQLNHDGLQGFQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLSPERPSLSWNTRIKIALGAARGLEYLHCTANPPVIYRDLKSANILLDDEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDTTKKPGEQNLVAWSRPFIKDRRKFVQLVDPLLEGCYPVRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSYASEQPRDGAAPNPSTLSPQQDRSHGKSSTSK | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12910712 | 12913482 | - | CmaCh01G020160.1 | Cma01g02016 | 287709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g02016 | 369 | Gene3D | Transferase(Phosphotransferase) domain 1 | 133 | 348 | - | - | |
Cma01g02016 | 369 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 179 | 191 | IPR008271 | GO:0004672|GO:0006468 | |
Cma01g02016 | 369 | ProSitePatterns | Protein kinases ATP-binding region signature. | 63 | 85 | IPR017441 | GO:0005524 | |
Cma01g02016 | 369 | Pfam | Protein kinase domain | 57 | 326 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g02016 | 369 | ProSiteProfiles | Protein kinase domain profile. | 57 | 333 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g02016 | 369 | MobiDBLite | consensus disorder prediction | 340 | 369 | - | - | |
Cma01g02016 | 369 | CDD | STKc_IRAK | 63 | 331 | - | - | |
Cma01g02016 | 369 | PANTHER | OS07G0668900 PROTEIN | 25 | 361 | - | - | |
Cma01g02016 | 369 | PIRSF | ILK | 11 | 346 | - | - | |
Cma01g02016 | 369 | Gene3D | Phosphorylase Kinase; domain 1 | 28 | 132 | - | - | |
Cma01g02016 | 369 | SMART | serkin_6 | 57 | 333 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g02016 | 369 | PANTHER | OS07G0668900 PROTEIN | 25 | 361 | - | - | |
Cma01g02016 | 369 | MobiDBLite | consensus disorder prediction | 20 | 40 | - | - | |
Cma01g02016 | 369 | SUPERFAMILY | Protein kinase-like (PK-like) | 38 | 331 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g02016 | Cma12g00680 | CCT | |
Cma01g02016 | Cma05g00975 | CCT | |
Cma01g02016 | Cma12g00680 | ECH | |
Cma01g02016 | Cma05g00975 | ECH | |
Cma01g02016 | Cma09g00051 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g02016 | Cma-Chr1:12910712 | Cma06g01475 | Cma-Chr6:9381522 | 2.56E-165 | dispersed | |
Cma01g02016 | Cma-Chr1:12910712 | Cma12g00680 | Cma-Chr12:3678680 | 0 | wgd | |
Cma01g02016 | Cma-Chr1:12910712 | Cma05g00975 | Cma-Chr5:7870534 | 0 | wgd | |
Cma01g02016 | Cma-Chr1:12910712 | Cma09g00051 | Cma-Chr9:217016 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68307 | PF00069 | Pkinase | 1.90E-44 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g02016 | - | - | csv:101203407 | 678.707 |