Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02019 ATGGGCGAGGTTTCCAAATCGACGATGAAGAAGAGAAAGAAAAAGGGCCGTCCTTCTCTCTTAGATCTCCAAAAACGGTTCCTCAAACAGCAGAAGTTGCAGGAACAGCATCAACAACCGCTTAACGCTTTCGACTTGGCCTCCAACCCTAAGAGTCCTTCAACTTGCCAGAATCGTAATGCTCACCCCGCGACAGAGCGCGTCACCGGCGACGACGACGACGATGACGACGAGCGCATTGAGAAGAAGCACAAACCTTTACTTGGTTTAACTTCTCGCCAAAACTATCCAACATTGTCCGCTTATTCTTTACGTAAATCATCCCCCTACGACGAAGATTCCGAGTCGGCACTCAAACGTCGCAGAATCGTTGCAGCCCAGTTTGGATCTTCAGAAGTGAGTGAAAAAACATGGAAAGCGACAGACACTGCGAATAATGGGTCGCAGGTGGAGTCTGGTCCCACGACAAGTTTGCCAGACAAAAAGTTGTTGATTTTCATCCTCGATAGGCTTCAAAAAAAAGACACCCATGGAGTCTTTTCCCAACCCGTCGATCAAAACGAGCTTCCCGATTACCATGTCCTTATTGAGAATCCTATGGATTTTGGGACTGTGAGGGCCAAATTAGATGGGGGAGCTTACGCAAATTTGGAACAGTTTGAGGAAGATATTTTTTTGATATGTTCAAATGCGATGAAATATAACGCTTCAGATACCGTTTTCTTCCGTCAGGCACGATCCATACAAGAACTTGCGAAGAGGGATTTTGAGAATTTGAGGCGAGAAAGCAGTGATGAAAGTGAAGCAGAACATAAAGTTGTGAGGAGGGGTAGACCCCCAGGAAAGAGCCAGAAGAGATGTCTAGGAGGTCTTGGTAGTAACCCTCTTGAAAGCAGCATTGGGGCAGAGTTTTGCTCGGGTGCTGCTACTCATGCTTCTGGCGATGATTCCATCAACGTCAATGGGTACAATTTGAGAAGGGCACGTTCTTCCTTCAGGCCCCTGCCTGAAGATCCTCCAGTTAGGACATCCGCAGCAGCTCAACATGGCGAAACTTTGGCCAGCTGGTTGCCTGAATGGAAAAATGAATTTCCAGCTTCAGTTTTGAAGGGTGTTCTTAAAAGTGGGAAGAATGATAATATGGCTGTGGATGAGAATAGACGTCATACCTATGGGAATAATCATTCATTGTCCTGTGGGAATTTGTCATCTGTCTTTGGTAACCTTGATGGAGACTTGAAGCAACTAATTACTGTAGGTTTGCATGCTGAGCATGGTTATGTAAGAAGCCTAGCTCTGTTTGTAGCGGATCTTGGTCCTGTAGTTTGGAAGATTGCATATAAGAAGATTGAAAGTAGTAGTCGGGAGCTGGGGCGAGTTCTGATACAGGAAATTGAAATGCTGAAGCAGCAGCAGCCCATGTTGCCTGCGGATGGAGGAGGCTCAGCTGACACAAAAACAGCAGCGGAGAGCTTTATCTGA 1482 46.36 MGEVSKSTMKKRKKKGRPSLLDLQKRFLKQQKLQEQHQQPLNAFDLASNPKSPSTCQNRNAHPATERVTGDDDDDDDERIEKKHKPLLGLTSRQNYPTLSAYSLRKSSPYDEDSESALKRRRIVAAQFGSSEVSEKTWKATDTANNGSQVESGPTTSLPDKKLLIFILDRLQKKDTHGVFSQPVDQNELPDYHVLIENPMDFGTVRAKLDGGAYANLEQFEEDIFLICSNAMKYNASDTVFFRQARSIQELAKRDFENLRRESSDESEAEHKVVRRGRPPGKSQKRCLGGLGSNPLESSIGAEFCSGAATHASGDDSINVNGYNLRRARSSFRPLPEDPPVRTSAAAQHGETLASWLPEWKNEFPASVLKGVLKSGKNDNMAVDENRRHTYGNNHSLSCGNLSSVFGNLDGDLKQLITVGLHAEHGYVRSLALFVADLGPVVWKIAYKKIESSSRELGRVLIQEIEMLKQQQPMLPADGGGSADTKTAAESFI 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12917873 12921102 - CmaCh01G020190.1 Cma01g02019 287712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02019 493 MobiDBLite consensus disorder prediction 1 94 - -
Cma01g02019 493 MobiDBLite consensus disorder prediction 260 290 - -
Cma01g02019 493 SUPERFAMILY Bromodomain 154 261 IPR036427 GO:0005515
Cma01g02019 493 ProSitePatterns Bromodomain signature. 177 234 IPR018359 -
Cma01g02019 493 MobiDBLite consensus disorder prediction 474 493 - -
Cma01g02019 493 PANTHER BROMODOMAIN-CONTAINING PROTEIN-RELATED 8 452 - -
Cma01g02019 493 SMART bromo_6 153 261 IPR001487 GO:0005515
Cma01g02019 493 PANTHER BROMODOMAIN CONTAINING PROTEIN 8 452 - -
Cma01g02019 493 MobiDBLite consensus disorder prediction 260 277 - -
Cma01g02019 493 PRINTS Bromodomain signature 175 188 IPR001487 GO:0005515
Cma01g02019 493 PRINTS Bromodomain signature 189 205 IPR001487 GO:0005515
Cma01g02019 493 PRINTS Bromodomain signature 205 223 IPR001487 GO:0005515
Cma01g02019 493 PRINTS Bromodomain signature 223 242 IPR001487 GO:0005515
Cma01g02019 493 Gene3D - 157 278 IPR036427 GO:0005515
Cma01g02019 493 MobiDBLite consensus disorder prediction 33 64 - -
Cma01g02019 493 Pfam Bromodomain 167 246 IPR001487 GO:0005515
Cma01g02019 493 ProSiteProfiles Bromodomain profile. 172 242 IPR001487 GO:0005515
Cma01g02019 493 Coils Coil 489 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02019 K22184 BRD9; bromodomain-containing protein 9 - csv:101217603 704.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02019 Cma-Chr1:12917873 Cma11g01333 Cma-Chr11:8836654 1.31E-79 dispersed
Cma01g02019 Cma-Chr1:12917873 Cma19g00798 Cma-Chr19:7712954 2.75E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011763 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02019 Cma_Chr01 FPKM 1.902842 1.988375 0.639127 0.938658 1.782455 1.118071 1.080345 3.022218 3.029358 2.394673