Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02021 ATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCGGCCAGTGCTTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAATCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGAAAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCTGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGAGGATGAGGAGTGA 444 48.2 MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGDDEAGDDDGSEEEDEE 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12921761 12923111 + CmaCh01G020210.1 Cma01g02021 287714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02021 147 Coils Coil 89 109 - -
Cma01g02021 147 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 144 IPR031061 -
Cma01g02021 147 SUPERFAMILY HMG-box 24 111 IPR036910 -
Cma01g02021 147 SMART hmgende2 37 108 IPR009071 -
Cma01g02021 147 MobiDBLite consensus disorder prediction 1 42 - -
Cma01g02021 147 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Cma01g02021 147 MobiDBLite consensus disorder prediction 1 16 - -
Cma01g02021 147 CDD HMGB-UBF_HMG-box 38 104 - -
Cma01g02021 147 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 144 - -
Cma01g02021 147 Gene3D High mobility group box domain 21 122 IPR036910 -
Cma01g02021 147 MobiDBLite consensus disorder prediction 132 147 - -
Cma01g02021 147 MobiDBLite consensus disorder prediction 56 147 - -
Cma01g02021 147 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Cma01g02021 147 MobiDBLite consensus disorder prediction 77 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02021 K25507 HMGBP; high mobility group B protein, plant - csv:101203891 211.075
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02021 Cma09g00049 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02021 Cma-Chr1:12921761 Cma06g00157 Cma-Chr6:787991 6.11E-47 dispersed
Cma01g02021 Cma-Chr1:12921761 Cma09g00049 Cma-Chr9:211689 6.22E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34388 PF00505 HMG_box 2.70E-23 CL0114 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02021 Cma_Chr01 FPKM 76.942566 76.928185 77.318779 62.731911 147.022339 161.177032 150.861572 120.745415 111.900162 94.862823