Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02023 ATGTTCAGCAACAGCACAAAGAACCAACAAAAGAGGAAGAAGAAGCAAAAGAGGAGGAGGAGGAGGATGGAGTGGCCGAACCAGCAGCAGCAGAACAACCAAACTGAGCAATTGCAAATTCAAGTAGAGCAATTGAGCAACGGCGATGGAGTTGGCGGGCTGTACGTCAAGGTAATGACGGATGAGCAAATGGAGCTCCTCAGGCACCAGATCTCTGTCTATGCTACCATATGTGAGCAGCTCGTGGAGATGCACAAGGCTATCACCGCCCACCAGGACCTTGCCGGAATTAGGGTAGGGAACCTTTACTGCGATCAAATAATGGCATCTGCGGCTGGTCACAAGATAAGCGCTAGGCAGAGGTGGACGCCCACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTCCACCTCACACAGCATGGCCAAATTTCAGAAGCAAATGTTTACAATTGGTTTCAGAACAGAAGGGCTCGCTCAAAAAGAAAGCAGGCAAATTCAACACCAAATAATCCAGACTCAGAACCAGACACAGAAGTTGATTCTCCAAAGGACAAAAAGACCAAACCAGAAACCTTCCAAACATATGACCAATTCGTTTCGAATTCCAACAACGTGTATTCTCAGACATCTGATTTAGGCGCTGAAATGCTCGCCTTTGATGCACAATCAAACAAAGGGGACCCCATGTTTCAGTCTTTCGGATCGAGTCATTTAAGTCAGGTGGCCACAGCACAGAATCACAGAAATAATGATAAGATGAACGTACCAGACGGCTACACCCCTTACCATCCTTGTGAAGGATATCCACTTGGTTGA 870 47.01 MFSNSTKNQQKRKKKQKRRRRRMEWPNQQQQNNQTEQLQIQVEQLSNGDGVGGLYVKVMTDEQMELLRHQISVYATICEQLVEMHKAITAHQDLAGIRVGNLYCDQIMASAAGHKISARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLHLTQHGQISEANVYNWFQNRRARSKRKQANSTPNNPDSEPDTEVDSPKDKKTKPETFQTYDQFVSNSNNVYSQTSDLGAEMLAFDAQSNKGDPMFQSFGSSHLSQVATAQNHRNNDKMNVPDGYTPYHPCEGYPLG 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12923752 12926089 + CmaCh01G020230.1 Cma01g02023 287716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02023 289 Pfam Homeodomain 119 179 IPR001356 GO:0003677
Cma01g02023 289 MobiDBLite consensus disorder prediction 1 35 - -
Cma01g02023 289 PANTHER - 23 256 - -
Cma01g02023 289 MobiDBLite consensus disorder prediction 174 211 - -
Cma01g02023 289 SMART HOX_1 117 184 IPR001356 GO:0003677
Cma01g02023 289 MobiDBLite consensus disorder prediction 8 22 - -
Cma01g02023 289 PANTHER WUSCHEL-RELATED HOMEOBOX 13 23 256 IPR044559 GO:0003700
Cma01g02023 289 SUPERFAMILY Homeodomain-like 118 181 IPR009057 -
Cma01g02023 289 MobiDBLite consensus disorder prediction 260 289 - -
Cma01g02023 289 ProSiteProfiles 'Homeobox' domain profile. 115 180 IPR001356 GO:0003677
Cma01g02023 289 MobiDBLite consensus disorder prediction 194 209 - -
Cma01g02023 289 Gene3D - 121 186 - -
Cma01g02023 289 CDD homeodomain 119 181 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02023 - - - csv:101204139 441.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02023 Cma09g00047 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02023 Cma-Chr1:12923752 Cma06g00150 Cma-Chr6:751766 4.40E-93 dispersed
Cma01g02023 Cma-Chr1:12923752 Cma09g00047 Cma-Chr9:205924 7.67E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma18g00071 CCT,CST,ECH 1 174 Wox Gene Family AT3G18010 58.0 4.1e-48 189.5
Cma13g00993 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 57.0 1.3e-46 184.5
Cma11g00311 CCT,ECH 1 165 Wox Gene Family AT3G18010 56.0 2.2e-41 167.2
Cma05g00171 CST 10 181 Wox Gene Family AT1G46480 58.9 4.2e-47 185.3
Cma12g00562 CST 5 138 Wox Gene Family AT1G46480 62.8 2.8e-43 172.6
Cma07g00209 CST 1 387 Wox Gene Family AT2G33880 50.1 1.0e-63 241.5
Cma06g00070 . 4 234 Wox Gene Family AT3G03660 51.9 7.5e-51 198.4
Cma14g00454 . 14 246 Wox Gene Family AT3G03660 50.6 2.8e-42 169.9
Cma16g01272 . 136 409 Wox Gene Family AT4G35550 52.2 1.2e-71 267.3
Cma06g00150 . 28 265 Wox Gene Family AT4G35550 53.7 1.3e-65 247.3
Cma09g00047 CST 1 191 Wox Gene Family AT4G35550 60.7 5.3e-56 215.3
Cma01g02023 CST 40 181 Wox Gene Family AT4G35550 71.3 8.0e-52 201.4
Cma06g00150 . 28 167 Wox Gene Family AT1G20700 56.6 2.0e-39 159.8
Cma01g02023 CST 57 188 Wox Gene Family AT1G20700 58.5 5.8e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34389 PF00046 Homeodomain 8.30E-18 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02023 Cma_Chr01 FPKM 9.120768 9.234752 9.307266 9.686468 6.176564 6.826403 6.359483 44.379551 46.684662 41.27021