Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02023 ATGTTCAGCAACAGCACAAAGAACCAACAAAAGAGGAAGAAGAAGCAAAAGAGGAGGAGGAGGAGGATGGAGTGGCCGAACCAGCAGCAGCAGAACAACCAAACTGAGCAATTGCAAATTCAAGTAGAGCAATTGAGCAACGGCGATGGAGTTGGCGGGCTGTACGTCAAGGTAATGACGGATGAGCAAATGGAGCTCCTCAGGCACCAGATCTCTGTCTATGCTACCATATGTGAGCAGCTCGTGGAGATGCACAAGGCTATCACCGCCCACCAGGACCTTGCCGGAATTAGGGTAGGGAACCTTTACTGCGATCAAATAATGGCATCTGCGGCTGGTCACAAGATAAGCGCTAGGCAGAGGTGGACGCCCACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTCCACCTCACACAGCATGGCCAAATTTCAGAAGCAAATGTTTACAATTGGTTTCAGAACAGAAGGGCTCGCTCAAAAAGAAAGCAGGCAAATTCAACACCAAATAATCCAGACTCAGAACCAGACACAGAAGTTGATTCTCCAAAGGACAAAAAGACCAAACCAGAAACCTTCCAAACATATGACCAATTCGTTTCGAATTCCAACAACGTGTATTCTCAGACATCTGATTTAGGCGCTGAAATGCTCGCCTTTGATGCACAATCAAACAAAGGGGACCCCATGTTTCAGTCTTTCGGATCGAGTCATTTAAGTCAGGTGGCCACAGCACAGAATCACAGAAATAATGATAAGATGAACGTACCAGACGGCTACACCCCTTACCATCCTTGTGAAGGATATCCACTTGGTTGA 870 47.01 MFSNSTKNQQKRKKKQKRRRRRMEWPNQQQQNNQTEQLQIQVEQLSNGDGVGGLYVKVMTDEQMELLRHQISVYATICEQLVEMHKAITAHQDLAGIRVGNLYCDQIMASAAGHKISARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLHLTQHGQISEANVYNWFQNRRARSKRKQANSTPNNPDSEPDTEVDSPKDKKTKPETFQTYDQFVSNSNNVYSQTSDLGAEMLAFDAQSNKGDPMFQSFGSSHLSQVATAQNHRNNDKMNVPDGYTPYHPCEGYPLG 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12923752 12926089 + CmaCh01G020230.1 Cma01g02023 287716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02023 289 Pfam Homeodomain 119 179 IPR001356 GO:0003677
Cma01g02023 289 MobiDBLite consensus disorder prediction 1 35 - -
Cma01g02023 289 PANTHER - 23 256 - -
Cma01g02023 289 MobiDBLite consensus disorder prediction 174 211 - -
Cma01g02023 289 SMART HOX_1 117 184 IPR001356 GO:0003677
Cma01g02023 289 MobiDBLite consensus disorder prediction 8 22 - -
Cma01g02023 289 PANTHER WUSCHEL-RELATED HOMEOBOX 13 23 256 IPR044559 GO:0003700
Cma01g02023 289 SUPERFAMILY Homeodomain-like 118 181 IPR009057 -
Cma01g02023 289 MobiDBLite consensus disorder prediction 260 289 - -
Cma01g02023 289 ProSiteProfiles 'Homeobox' domain profile. 115 180 IPR001356 GO:0003677
Cma01g02023 289 MobiDBLite consensus disorder prediction 194 209 - -
Cma01g02023 289 Gene3D - 121 186 - -
Cma01g02023 289 CDD homeodomain 119 181 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02023 Cma09g00047 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02023 Cma-Chr1:12923752 Cma06g00150 Cma-Chr6:751766 4.40E-93 dispersed
Cma01g02023 Cma-Chr1:12923752 Cma09g00047 Cma-Chr9:205924 7.67E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34389 PF00046 Homeodomain 8.30E-18 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02023 - - csv:101204139 441.81