Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g02023 | ATGTTCAGCAACAGCACAAAGAACCAACAAAAGAGGAAGAAGAAGCAAAAGAGGAGGAGGAGGAGGATGGAGTGGCCGAACCAGCAGCAGCAGAACAACCAAACTGAGCAATTGCAAATTCAAGTAGAGCAATTGAGCAACGGCGATGGAGTTGGCGGGCTGTACGTCAAGGTAATGACGGATGAGCAAATGGAGCTCCTCAGGCACCAGATCTCTGTCTATGCTACCATATGTGAGCAGCTCGTGGAGATGCACAAGGCTATCACCGCCCACCAGGACCTTGCCGGAATTAGGGTAGGGAACCTTTACTGCGATCAAATAATGGCATCTGCGGCTGGTCACAAGATAAGCGCTAGGCAGAGGTGGACGCCCACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTCCACCTCACACAGCATGGCCAAATTTCAGAAGCAAATGTTTACAATTGGTTTCAGAACAGAAGGGCTCGCTCAAAAAGAAAGCAGGCAAATTCAACACCAAATAATCCAGACTCAGAACCAGACACAGAAGTTGATTCTCCAAAGGACAAAAAGACCAAACCAGAAACCTTCCAAACATATGACCAATTCGTTTCGAATTCCAACAACGTGTATTCTCAGACATCTGATTTAGGCGCTGAAATGCTCGCCTTTGATGCACAATCAAACAAAGGGGACCCCATGTTTCAGTCTTTCGGATCGAGTCATTTAAGTCAGGTGGCCACAGCACAGAATCACAGAAATAATGATAAGATGAACGTACCAGACGGCTACACCCCTTACCATCCTTGTGAAGGATATCCACTTGGTTGA | 870 | 47.01 | MFSNSTKNQQKRKKKQKRRRRRMEWPNQQQQNNQTEQLQIQVEQLSNGDGVGGLYVKVMTDEQMELLRHQISVYATICEQLVEMHKAITAHQDLAGIRVGNLYCDQIMASAAGHKISARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLHLTQHGQISEANVYNWFQNRRARSKRKQANSTPNNPDSEPDTEVDSPKDKKTKPETFQTYDQFVSNSNNVYSQTSDLGAEMLAFDAQSNKGDPMFQSFGSSHLSQVATAQNHRNNDKMNVPDGYTPYHPCEGYPLG | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12923752 | 12926089 | + | CmaCh01G020230.1 | Cma01g02023 | 287716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g02023 | 289 | Pfam | Homeodomain | 119 | 179 | IPR001356 | GO:0003677 | |
Cma01g02023 | 289 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cma01g02023 | 289 | PANTHER | - | 23 | 256 | - | - | |
Cma01g02023 | 289 | MobiDBLite | consensus disorder prediction | 174 | 211 | - | - | |
Cma01g02023 | 289 | SMART | HOX_1 | 117 | 184 | IPR001356 | GO:0003677 | |
Cma01g02023 | 289 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
Cma01g02023 | 289 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 23 | 256 | IPR044559 | GO:0003700 | |
Cma01g02023 | 289 | SUPERFAMILY | Homeodomain-like | 118 | 181 | IPR009057 | - | |
Cma01g02023 | 289 | MobiDBLite | consensus disorder prediction | 260 | 289 | - | - | |
Cma01g02023 | 289 | ProSiteProfiles | 'Homeobox' domain profile. | 115 | 180 | IPR001356 | GO:0003677 | |
Cma01g02023 | 289 | MobiDBLite | consensus disorder prediction | 194 | 209 | - | - | |
Cma01g02023 | 289 | Gene3D | - | 121 | 186 | - | - | |
Cma01g02023 | 289 | CDD | homeodomain | 119 | 181 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g02023 | Cma09g00047 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g02023 | Cma-Chr1:12923752 | Cma06g00150 | Cma-Chr6:751766 | 4.40E-93 | dispersed | |
Cma01g02023 | Cma-Chr1:12923752 | Cma09g00047 | Cma-Chr9:205924 | 7.67E-154 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34389 | PF00046 | Homeodomain | 8.30E-18 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g02023 | - | - | csv:101204139 | 441.81 |