Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02025 ATGGATCAGTTCGACGCATTCTTCAGGAGAGCCGATTTGGATGGTGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGGCTCCAATTTGCCTAAAAATGTTCTTGCACAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTTCTTGGGCGACCTGAATTTTATAATGCTCTCAGACTCGTAACTGTTGCTCAAAGTAAGCGAGAGCTAACTCCTGATATTGTTAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATACCCCCACCAAAGATTGTTCTTCCAGCTGTATCTACCCCTCAATCAACTTCAGTGCCTGCTGCATCTCCTCCACAGATGAGTATGCCTGCACCAACGGCATCTCAAAATTTTGGCTTTAGAGGACAAGGAGTTCCAAGTGTAGGTGTGAATCAGCAGCATATTTCAGCCCAGCCAAACCCTTCCATGAGGTTACCTCAAGCTACACCTGGTGGTGTTTCTTCCAGTACGCAAATGGTTGTTGCTGCTGCTGAACACTCTGGTGGAGGACACGTACGGAGTTCAAGTCTTCCAAACACAAATGATTGGCTTGGTGGAAGACCAGGTGGTGCCCTTGCTGCTGGGCCTAGAGGAGTTAGCCCTTCAGTGCCTTCCCCAGCTACGTCGTTATCATCAGCTTTAGTGCCTTCTCAGCCTATGCCTAATGATAGAGCACTGGCTGTTTCTGGTAATGGATTTACTTCTAAGTCGGCAATTGGTGCTGACATGTTTTCTATTACTCCATCTCCACATAGACCAGATTCTACCGGACTCAACAATACAGCTAACGGTAGTATTGGCCCATCAGCCATCGTTCCAGTTTCCAGTGTATCCCAACCTTTTAGTCAGCACAAATCGATGGAGTCATTGCAGAGTGCCTTTGTCTCACGGCCATTATCTGGCGCACCGTTACAGCTCTCTCAGTCACCCTTACAGCTCAATCAGTCACCCTTACAGCTCTCTCAGTCAGCACTGGAACCTACCAAGGAGGTTAGAGCAACAGGTCCATCACCACTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCGACTTCTGAACATGCACAGGTTTCTTGGCCAAAGATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGACGGTAGAATTACTGGTGAGCAGGCACGGAATCTATTTTTAAGTTGGAGGTTACCTAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTTAGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGTCGACCTCTTCCAGCTGTGCTTCCAAATAATGTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAACCTAACGTTGTCCACCCAAATGTAGCTTGGGGTCCCCATCCTGGATTTGGACAGCAGCAACCCCAGGTCGCTGCTCGGTCGATGGCACCAACTGCAGGATTGAGGCCCCCAACAAATGTACCTGCTTCGAAGGCTGGTGGTGCTAGACTATCCAATGCGCAGAAATCAAGGACTCCAGTGTTGGAGGATTCATTTCTGGACCAATCTGACAAGAACCAACAGAATTCAGCTAGCCCAAATGCTCAAGATGCTACAGCATCAGAGAAAAAGGCATCTCCTTATATCTATCAGTCAACTTTCATATTATATAATGTTATTTTGGATTCAAGAGAAAAGATTGAATTCTATCGCACAATGATGCAGGAACTTGTTCTGCATAAAAGCAGATGTGATAATAGATTAAATGAGATCACAGAAAGGGCATCTGCTGACAGGCGTGAGGCAGAAACTTTGGGGAAAAAATATGAGGAGAAGTACAAGCAAGTGGCTGACTTAGCATCTAAGTTAACCATTGAAGAAGCAAATTATCGTGATGTTCAAGAAAGGAAGGCAGAGCTGCATGAAGCAATTATTAAAATGGAACAAGGAGGAAGTGCTGATGGTATTCTTCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGTTGCTTCTTAAGGCTTTAACTGAACGTTGTAAGAGACATGGAATTGATGTTAAGTCGGCAGCTATGATCGAACTTCCAGTAGGCTGGCAACCTGGAATTGCGGATGATGCAGCTGTTTGGGATGAAGAGTGGGATAAGTTTGAAGATGAAGGATTTTCCAATGACCTCAATCTCGATCCGAAGCGTGTTTCTGCCTCAAAACCAAAAATGTCAGATAGTCTGGATGAAAAGGATCTAGAAGATTATAACTCAACCCTTGATTCATCGTTCAATGGCAATGACAAGACCAAAGTGGGGATCTTCTCGAGTACCATCAATCATGGCCTTGAGAGTGAATTTATGTATAGCCACAGTGAAGATGAATCAGCTAGAAGTCCATATGGCAGTCCAGCTGCAAAGACATCTCTAGAAAGCCCTCATGAATTTTCAGATGCTGTTTATGAAAAAAGTCCGGAAGCATATAGAAGTTTCGATGAGTCAACTTGGGGCGCCTTTGACAACAATGACGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAATCAGACGCTGAAAAGCACCAAGATATGTTTGGATCCGGTGATTTCGATACGAGCTCTGCTAAAACAGCATCCCCCAATGCAGATAGCTTCTTTCAGACAAAAAGCCCATTTTTTGAGGATTCTGTCCCTCCCACTCCTCTCTCTAGATTCGGCAACTCCTCTTCCCCTCGTTATAGTGATGTGGGGGACCACTTCTTTGACAATTCCTCCAGGTTCGATTCATTCAGCATGCAGGATCCCAGTTTTTCTCCACAACGCGAGAAGTTCTCCAGGTTCGATTCAATAGGCAGTTCTCAAGACTTTGGCGGTAACCAGGAGAAGTTTTCAAGGTTTGATTCTATCAGTAGTAGCATGGACTTCGGCCAGAGCAGCCAGCGGCACGCCAGGTTTGACTCCGCTGGCAGCTCCAGAGATTTCAGCCACAGTGCCTTCTCTTTTGATGATGCTGACCCATTTGGGTCCTCTGCCCCGTTTAAAGCCCCATCAGAGAATCAAAGTCCCAACAAAAGTTCTGATAAGATCAATTTTCGCGTACCTGGCGGAGTGTTGATGACAATGCATCCAACAGATTCAGATAATCATCCGTCGAATCCAGAAATTGCAGCAAAATGCTTTCTCGTTCTTCTCGTTTTTGCTTCTGTTGTTCTTGCCGCGTTTCTTCAATTCCATCTTCCTCCCCTGACTCGTTCAGGGAATCCAGCGATGGATCTGATTTGCAAACGGAAGAGAAGCTCTGTGAGGTGTTGGGAGAGAGGAGGTGAAACTCAGGCTCCGATTGGACCAGACGCAAACGACCATGAAATCCAACGCGTGGTGATCTACTTCGGCGTCGTCGATTGCATTGATGATAAATGCGCCGCCTGCAATGCTGTTGCCGAGGAGATAGAACGTGGACTTTCCAATGAAAAACCGAGGAATCATTTAGATATGAGACATCGGTTGGATTCTAAAGGTCAGCGTAAAGGGAAGGTAATTGATTACAGGGTCAGTGAGCTACGAGTAGTCGAACTCCTGGATGGGCTTTGTGAAAACATGCAAGATTACACGATTGATAAGACAGATTCAACTGGACAACAGTGGATCAAGGTGGATAACTGGGACAACCTAGCAAATAAACAAGAAGCTCGGGCCTATTCAAAAGACATATCAACTTATTGTGGAAGGTTATTAGAGGAAGCAGAAGATGACTTGGCAGAGTTGATTAAGAAAGGATCTATCAGAGCAAGTAACGTTAAGAAAGTCCTATGCCATGATTTGAGCAGACATTGCAGCAAGGCGAGCGGTGCTCAGCTGAATGACAATGATGACGAAGCAGATGGAGAATTATGA 3939 45.21 MDQFDAFFRRADLDGDGRISGAEAVAFFQGSNLPKNVLAQIWMHADQRKTGFLGRPEFYNALRLVTVAQSKRELTPDIVKAALYGPAAAKIPPPKIVLPAVSTPQSTSVPAASPPQMSMPAPTASQNFGFRGQGVPSVGVNQQHISAQPNPSMRLPQATPGGVSSSTQMVVAAAEHSGGGHVRSSSLPNTNDWLGGRPGGALAAGPRGVSPSVPSPATSLSSALVPSQPMPNDRALAVSGNGFTSKSAIGADMFSITPSPHRPDSTGLNNTANGSIGPSAIVPVSSVSQPFSQHKSMESLQSAFVSRPLSGAPLQLSQSPLQLNQSPLQLSQSALEPTKEVRATGPSPLISSGITTGARNSTSEHAQVSWPKMKPTDVQKYTKVFMEVDTDRDGRITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFSFALYLMERYREGRPLPAVLPNNVMFDETLLSMTGQPNVVHPNVAWGPHPGFGQQQPQVAARSMAPTAGLRPPTNVPASKAGGARLSNAQKSRTPVLEDSFLDQSDKNQQNSASPNAQDATASEKKASPYIYQSTFILYNVILDSREKIEFYRTMMQELVLHKSRCDNRLNEITERASADRREAETLGKKYEEKYKQVADLASKLTIEEANYRDVQERKAELHEAIIKMEQGGSADGILQVRADRIQSDIELLLKALTERCKRHGIDVKSAAMIELPVGWQPGIADDAAVWDEEWDKFEDEGFSNDLNLDPKRVSASKPKMSDSLDEKDLEDYNSTLDSSFNGNDKTKVGIFSSTINHGLESEFMYSHSEDESARSPYGSPAAKTSLESPHEFSDAVYEKSPEAYRSFDESTWGAFDNNDDVDSVWGIKPVNTKESDAEKHQDMFGSGDFDTSSAKTASPNADSFFQTKSPFFEDSVPPTPLSRFGNSSSPRYSDVGDHFFDNSSRFDSFSMQDPSFSPQREKFSRFDSIGSSQDFGGNQEKFSRFDSISSSMDFGQSSQRHARFDSAGSSRDFSHSAFSFDDADPFGSSAPFKAPSENQSPNKSSDKINFRVPGGVLMTMHPTDSDNHPSNPEIAAKCFLVLLVFASVVLAAFLQFHLPPLTRSGNPAMDLICKRKRSSVRCWERGGETQAPIGPDANDHEIQRVVIYFGVVDCIDDKCAACNAVAEEIERGLSNEKPRNHLDMRHRLDSKGQRKGKVIDYRVSELRVVELLDGLCENMQDYTIDKTDSTGQQWIKVDNWDNLANKQEARAYSKDISTYCGRLLEEAEDDLAELIKKGSIRASNVKKVLCHDLSRHCSKASGAQLNDNDDEADGEL 1312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12926790 12939481 + CmaCh01G020250.1 Cma01g02025 287718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02025 1312 MobiDBLite consensus disorder prediction 868 896 - -
Cma01g02025 1312 Gene3D - 1 96 - -
Cma01g02025 1312 MobiDBLite consensus disorder prediction 338 372 - -
Cma01g02025 1312 MobiDBLite consensus disorder prediction 802 829 - -
Cma01g02025 1312 Gene3D - 371 460 - -
Cma01g02025 1312 Pfam EF hand 5 21 IPR002048 GO:0005509
Cma01g02025 1312 SMART efh_1 3 31 IPR002048 GO:0005509
Cma01g02025 1312 SMART efh_1 380 408 IPR002048 GO:0005509
Cma01g02025 1312 SMART efh_1 37 65 IPR002048 GO:0005509
Cma01g02025 1312 SMART efh_1 414 442 IPR002048 GO:0005509
Cma01g02025 1312 MobiDBLite consensus disorder prediction 477 560 - -
Cma01g02025 1312 SUPERFAMILY EF-hand 366 460 IPR011992 -
Cma01g02025 1312 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 973 - -
Cma01g02025 1312 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 976 1044 - -
Cma01g02025 1312 MobiDBLite consensus disorder prediction 1025 1044 - -
Cma01g02025 1312 MobiDBLite consensus disorder prediction 212 228 - -
Cma01g02025 1312 MobiDBLite consensus disorder prediction 348 369 - -
Cma01g02025 1312 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Cma01g02025 1312 SUPERFAMILY EF-hand 2 83 IPR011992 -
Cma01g02025 1312 PANTHER EH DOMAIN 1 973 - -
Cma01g02025 1312 PANTHER EH DOMAIN 976 1044 - -
Cma01g02025 1312 Coils Coil 640 660 - -
Cma01g02025 1312 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Cma01g02025 1312 Pfam TLR4 regulator and MIR-interacting MSAP 1154 1293 IPR021852 -
Cma01g02025 1312 MobiDBLite consensus disorder prediction 196 228 - -
Cma01g02025 1312 MobiDBLite consensus disorder prediction 1028 1043 - -
Cma01g02025 1312 CDD EH 4 70 IPR000261 GO:0005515
Cma01g02025 1312 MobiDBLite consensus disorder prediction 520 560 - -
Cma01g02025 1312 Pfam Cytoskeletal-regulatory complex EF hand 371 442 IPR000261 GO:0005515
Cma01g02025 1312 CDD EH 381 447 IPR000261 GO:0005515
Cma01g02025 1312 ProSiteProfiles EH domain profile. 377 460 IPR000261 GO:0005515
Cma01g02025 1312 MobiDBLite consensus disorder prediction 737 762 - -
Cma01g02025 1312 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Cma01g02025 1312 MobiDBLite consensus disorder prediction 882 896 - -
Cma01g02025 1312 SMART eh_3 370 465 IPR000261 GO:0005515
Cma01g02025 1312 SMART eh_3 2 88 IPR000261 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02025 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1577.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02025 Cma09g00044 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02025 Cma-Chr1:12926790 Cma11g01331 Cma-Chr11:8820271 3.95E-07 dispersed
Cma09g00044 Cma-Chr9:180144 Cma01g02025 Cma-Chr1:12926790 0 transposed
Cma01g02025 Cma-Chr1:12926790 Cma19g00799 Cma-Chr19:7720970 1.81E-06 wgd
Cma01g02025 Cma-Chr1:12926790 Cma09g00043 Cma-Chr9:175904 8.44E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02025 Cma_Chr01 FPKM 16.844669 16.434814 14.751343 14.338706 12.955076 12.297974 13.507624 25.570749 23.637102 24.519444