Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02026 ATGAAGGAAATACCAGATCCATCGCTGGATTCCCTGAACGAGTCAGGGGAGGAAGATGGAATTGAAGAAACGCGGCAAGAACAACAGAAGCAAAAACGAGAAGAACGAGAAAGCATTTTGCTGCAATTTCTGGATTCGACGGATGATTATCTGAATCTGTTGGATGCATTGTCATCAACACTCCGCCAGGGATGGTTTGATTTGGCGAGCGCCCGACATTCTATGGGTACCTCTCGCGTAAGCACTGCATTACTGGACTTGAAAATTCATTCTGCTGCTACATCGCTGCGGGTGGACGAACGCGATGGTGGCTCCATAGGAACGCAGCCATTCATTAACTTGCGGAAATGGACATCCACTGAAGGTGGAGAGTGCTTGGTAGAAGATAAATACAATGACAAATTGGAAAGGAAATCTGATAGTCCTCAGCTACGACAACGGAACATTTCTGAGCTTTCTGAAGATGATCTGGGGAGAAGTTCTACAAAGAAAGAAGATGCTTTCATCATTGATGATCAGGTACAAAAGGAACGATCTCGAACACTTTCAATGTTTGGAACTTTAGTTTCCCCCAAGCTCCGATCAGCTCAACTTTCATTTGAAAATGCACTTGAACTTATTGTGGAAATTGCAAATAAGCGTTTGGCAATGTCATCTTCCTTCGATCAAGTCAAGAAAGGATTGGACGACGCATCCTCCTTCGAGCAAGTGAAGGAAGAACTGTAA 726 44.21 MKEIPDPSLDSLNESGEEDGIEETRQEQQKQKREERESILLQFLDSTDDYLNLLDALSSTLRQGWFDLASARHSMGTSRVSTALLDLKIHSAATSLRVDERDGGSIGTQPFINLRKWTSTEGGECLVEDKYNDKLERKSDSPQLRQRNISELSEDDLGRSSTKKEDAFIIDDQVQKERSRTLSMFGTLVSPKLRSAQLSFENALELIVEIANKRLAMSSSFDQVKKGLDDASSFEQVKEEL 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12933546 12935877 - CmaCh01G020260.1 Cma01g02026 287719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02026 241 MobiDBLite consensus disorder prediction 1 35 - -
Cma01g02026 241 MobiDBLite consensus disorder prediction 136 158 - -
Cma01g02026 241 MobiDBLite consensus disorder prediction 18 35 - -
Cma01g02026 241 PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 115 28 229 IPR040357 GO:0070072
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02026 K23543 CCDC115; coiled-coil domain-containing protein 115 - csv:101206061 350.132
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g77 . . . . . . . . . . Cma01g02026 . Car01g01592 . . . . . . . . . . . . . . . . . . . . Cone17ag1460 . Lsi04g01820 Csa04g02717 . . . . . . . . . . Sed01g2422 Cmo01g02080 . . . . . . Cpe02g00028 Bhi09g02851 Tan01g5127 Cmetu07g1293 . Hepe01g2351 Mch11g0046 . Cla11g01833 Cam11g1900 Cec11g1926 Cco11g1935 Clacu11g2064 Cmu11g1869 Cre11g2277 . . Chy07g00405 Cme07g00043
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011485 0 2 1 0 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 0 1 1 1 1 2 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02026 Cma_Chr01 FPKM 20.902847 22.420513 18.442896 16.228968 24.245016 24.882046 20.98868 17.21216 17.039663 16.258505