Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02027 ATGGCTACGGGTATAGATTTTTCACCTCCCTTTGCCCTACTAGAAGGCGGCGGATACAGTAAGGACAATGTATCAGCGACAAATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGACCACTGGGAAACCTCCCCGACACCTCTCGGTTTCGCGGCATAGTGTGAGCTCTATAAAGCTGCTAGGCCAAGCTGATTTAAGCTTGGATGCCGATACTCTTGGGAATAATTCGCCTGATGGGAAAGCAGGATTCTTACCTGTCTTCAGATCGGGTAGCTGTTCAGAAAGGGGACCTAAGCAGTACATGGAAGATGAGCACATATGCATAGATGATCTTGTAGAACACATTCATGCATGTGCAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGGGGTACAGATGCAGCAGCTTTTGTCAGAAATAACATCCTTAGATTCATAGTCGAGGACTCCTGTTTTCCAGTTAGTGTAGATAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTATGCATTTGCTGATGCTAGTTCTCTGGATATCTCCTCCGGCACAACTGCGCTAACTGCTTTCATTTTTGGAAGAACAATGATTATTGGGAATGCCGGAGATTGTCGAGCAGTTCTGGGGAGGAGGGGCAAGGCTATTGAGGTGTCAAAGGATCACAAGCCCAATTGTGCATCTGAAAAACTCAGAATAGAGAAGCTCGGGGGAGTGATTTATGATGGCTACCTGAATGGTCAGTTATCTGTTGCGCGTGCTATAGGAGACTGGCACATGAAAGGTTCCAAGGGTTCTGCATGCCCGCTGAGTGCAGAGCCAGAGCTGCAGGAATTGCAATTGACGGAGGAAGATGAATTTCTAATTATGGGCTGCGATGGTCTTTGGGATGTGATGAGCAGTCAGTATGCTGTTACAATGGCAAGGAAAGAGCTGATGCTGCATAATGATCCTGAAAGATGTTCAAGAGAGCTGGTAAGAGAGGCGCTGAAGCGCAATACATGCGATAATTTAACCGTTATTGTAGTATGTTTTTCTGCTGATCCGCCCCCTCGGATAGAAATTCCCCCAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTACTGGACTGCAATTCATGA 1161 45.31 MATGIDFSPPFALLEGGGYSKDNVSATNDESSDSFNSLKQMTTGKPPRHLSVSRHSVSSIKLLGQADLSLDADTLGNNSPDGKAGFLPVFRSGSCSERGPKQYMEDEHICIDDLVEHIHACADFTSPGAFYGVFDGHGGTDAAAFVRNNILRFIVEDSCFPVSVDKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIGNAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGSKGSACPLSAEPELQELQLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPPTRVRRSISLEGLNLLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12939420 12943215 - CmaCh01G020270.1 Cma01g02027 287720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02027 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Cma01g02027 386 CDD PP2Cc 90 351 IPR001932 -
Cma01g02027 386 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Cma01g02027 386 Gene3D - 78 354 IPR036457 -
Cma01g02027 386 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 373 - -
Cma01g02027 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
Cma01g02027 386 SMART PP2C_4 81 349 IPR001932 -
Cma01g02027 386 MobiDBLite consensus disorder prediction 23 51 - -
Cma01g02027 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Cma01g02027 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02027 Cma09g00041 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02027 Cma-Chr1:12939420 Cma05g01243 Cma-Chr5:9542146 3.36E-107 dispersed
Cma01g02027 Cma-Chr1:12939420 Cma09g00041 Cma-Chr9:172537 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02027 K14803 - csv:101205355 730.324