Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02028 ATGAGTTTCATTTGGCTTCTCTCCTTGCTATCTCTTTATTGTGGTATATTCCCTGTTGGGCTTGGTAAGAACATCTCCTCAAGACCATCGGTCGTGAACATTGGAGCTATTTTTTCTTTTGATTCTACCATTGGAAAAGTTGCCAAGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCTACCGTTCTTCCCACAACCAACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTCTTAGGCATGGCCGAAGTTTTGCAACTTATGGAGAATGCAACCGTCGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAATTGCAACCGAGTTCCAAGTTCCTCTAGTCTCATTTTCAGCTACAGATCCTACTCTCTCCGCCCTTCAGTTTCCCTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCAGTTGCTGAGATTATTGAGTACTATGATTGGAAAGAGGTTATCGCTATATACGTCGATGATGATTATGGGTGGAATGGTATTGCAGCATTGGATGATAAGCTTTCTGAAAAACGTTGTAAAATCACATACAAGGTGGGTATTAGTCCCGAAACTGCGGTAAACCAAGTCCAAGTTATGGATCAACTTGTTAAGATTGCATTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCACTTTAGTCTTTTCAGTGGCTAAATCCCTTCAAATGATGGGCAATGGATATGTATGGATAGCAACTGATTGGCTTTCGTCTCTACTAGATAGTGTTGTTCCCCCACCTCCTGAGACCTTGGACTCGATGCAAGGAGTTCTTTCTTTACGCCAGCACACAGCAGAGTCAGATCAAAAGAAAGCTTTTCTTTCCAGGTGGAATAAGTTAACTGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTCTATGCTTATGACTCTGTCTGGGTGGTTGCTCATGCTATTGACAAATTTTTTAATCAAGGTGGGGTCATTACACATTCTAATGATTCCAGGCTGAATTTCAGTGGAAACGGTGATCTTCATCTTGAAGCTATGACCATCTTCGATGGTGGAAATCATCTGCTGAATAACATATTGGAGAGTGACCTTTTTGGTTTGACGGGTGCCCTTAAGTTCGATTCTGGTAGATCCCTTGTTCATCCTGCATATCATATTATTAACGTTATCGGGACTGGGTCAAGAAGGGTTGGCTACTGGTCTAACTATTCTGGTCTATCAATTGAAGCTCCTGAGATTCTCTATTCCAGACCACCTAACCGTTCACACGCAAATCAGAAGCTGTACGAGGTTATATGGCCAGGAAATACAGTGGAAAAGCCTCGAGGATGGGTGTTCCCAAACAACGGGAAGCTACTAAACATTGGAGTGCCACTTCGGGCCAGTTTCAAGGAGTTTGTTTCACAAATCAAAGGGTCCGACAATTTCCAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAGCTTGTTACCTTACGCTGTCCCCCACCAATTCATAGCCTTTGGCAATGGCCATCACAATCCAAATTACACAGATCTTGTATATGGGATAACAACTGGCAAATTTGATGCCGTTGTTGGAGACGTAGCCATTGTCACAAGCCGTACAAGGCTTGTGGATTTTACCCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCACTCAAAAAACTGAACACTGGTGCTTGGGCTTTCTTGCATCCATTTTCTCCAGCCATGTGGATGGTTACTGCTGCTTTCTTCCTTTTTATCGGAATAGTCGTCTGGATTCTGGAGCATAGGACGAACGATGAATTCCGAGGCCCACCGAGAAGACAATGCATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAGAACACAGTTAGCACTCTCGGCCGCCTTGTGCTGATCATATGGCTGTTTGTGGTTTTGATTATAAATTCTAGCTACACTGCAAGCTTAACATCCATTCTCACGGTGCAGCAGCTATATTCTCCAATCACAGGAATAGAAACCTTGAGGGAAATTGATGAACCGATTGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTGAACGTGTCTAGATCTAGGCTTATTCCTCTTGGATCTCCGGAAGAATATGCCAAGGCACTTGATCTTGGCCCTGGCAAGGAGGGAGGCGTTGCTGCTGTAGTTGATGAACTTCTATATGTAGAAAATTTCATCTCTAGAGAGTGTAAATTCAGAGTTGTTGGTCATGAGTTTACCAAAAGCGGCTGGGGTTTCGCATTCCCACGAGACTCTCCATTGGCTATAGACATGTCAACTGCCATTTTGCAGCTATCCGAGAACGGCGATCTGCAACGGATACATGACAAATGGGTTGTGAAAAGTGCTTGCATCTCAGACAGTACAGATCTCAAATCAGACTCGCTTCAACTTAAGAGCTTCTGGGGTCTCTTTCTTATCTGTGGGACAGTGTGCTTCATTGCCCTTGCCATATACTGCCTTCAGATTATTCGTCAGCTATACCATTCTGATTCAAAAGAATCTGATCTGTCTAGCAGTAGTGGATCGCATCCGAACCGTCTTCGACGAATCATGTCGTTGTTTGATGAGAAGAAAGAACCAAGGCAAAGCAAACGAAGGAAGGTTGAGAAATCATCCGAAAATGATAAGAATGATGGTAATTTGGTGGTAAATCCTTGA 2751 43.37 MSFIWLLSLLSLYCGIFPVGLGKNISSRPSVVNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTVLPTTNLWLQMQNSNCSGFLGMAEVLQLMENATVAIIGPQSSVVAHISSQIATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIIEYYDWKEVIAIYVDDDYGWNGIAALDDKLSEKRCKITYKVGISPETAVNQVQVMDQLVKIALMESRVMVLHVNPKLGTLVFSVAKSLQMMGNGYVWIATDWLSSLLDSVVPPPPETLDSMQGVLSLRQHTAESDQKKAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHSNDSRLNFSGNGDLHLEAMTIFDGGNHLLNNILESDLFGLTGALKFDSGRSLVHPAYHIINVIGTGSRRVGYWSNYSGLSIEAPEILYSRPPNRSHANQKLYEVIWPGNTVEKPRGWVFPNNGKLLNIGVPLRASFKEFVSQIKGSDNFQGFCIDVFTAAVSLLPYAVPHQFIAFGNGHHNPNYTDLVYGITTGKFDAVVGDVAIVTSRTRLVDFTLPYTASGLVVVAPLKKLNTGAWAFLHPFSPAMWMVTAAFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPITGIETLREIDEPIGFQVGSFAERYLSEELNVSRSRLIPLGSPEEYAKALDLGPGKEGGVAAVVDELLYVENFISRECKFRVVGHEFTKSGWGFAFPRDSPLAIDMSTAILQLSENGDLQRIHDKWVVKSACISDSTDLKSDSLQLKSFWGLFLICGTVCFIALAIYCLQIIRQLYHSDSKESDLSSSSGSHPNRLRRIMSLFDEKKEPRQSKRRKVEKSSENDKNDGNLVVNP 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12944004 12948842 + CmaCh01G020280.1 Cma01g02028 287721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02028 916 CDD GluR_Plant 466 808 - -
Cma01g02028 916 MobiDBLite consensus disorder prediction 865 916 - -
Cma01g02028 916 Gene3D - 578 715 - -
Cma01g02028 916 Gene3D - 775 808 - -
Cma01g02028 916 Gene3D - 740 774 - -
Cma01g02028 916 Pfam Ligand-gated ion channel 810 840 IPR001320 GO:0015276|GO:0016020
Cma01g02028 916 Gene3D - 147 421 - -
Cma01g02028 916 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Cma01g02028 916 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
Cma01g02028 916 SUPERFAMILY Periplasmic binding protein-like II 446 811 - -
Cma01g02028 916 Gene3D - 459 577 - -
Cma01g02028 916 Pfam Bacterial extracellular solute-binding proteins, family 3 488 809 IPR001638 -
Cma01g02028 916 MobiDBLite consensus disorder prediction 880 907 - -
Cma01g02028 916 Gene3D - 50 396 - -
Cma01g02028 916 PANTHER GLUTAMATE RECEPTOR 3.3 11 912 - -
Cma01g02028 916 PIRSF IGluLR_plant 1 912 IPR017103 -
Cma01g02028 916 SMART GluR_14 469 811 IPR001320 GO:0015276|GO:0016020
Cma01g02028 916 Pfam Receptor family ligand binding region 50 406 IPR001828 -
Cma01g02028 916 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 912 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02028 Cma09g00038 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02028 Cma-Chr1:12944004 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma01g02028 Cma-Chr1:12944004 Cma19g00801 Cma-Chr19:7732635 0 wgd
Cma01g02028 Cma-Chr1:12944004 Cma03g00620 Cma-Chr3:5405784 0 wgd
Cma01g02028 Cma-Chr1:12944004 Cma07g00382 Cma-Chr7:1636511 0 wgd
Cma01g02028 Cma-Chr1:12944004 Cma09g00038 Cma-Chr9:166741 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02028 K05387 - csv:101204862 1595.48