Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02029 ATGGCCACTCACGCAGCTCTGGCTTCAACAAGGATCCCCACCAATACAAGGTTTCCTTCCAAGACTTCCTATTCTTTCCGACCTCGATGCTCATCCAAGAGGCTGGATGTTGCTGAGTTCAATGGGCTTAGATCTGCTTGCCTGACCTTCTCTAACAATGGCAGAGAAGGATCCCTCTTCGACGTCGTGGCTGCTCAACTGACTCCCAAGAATAGAAACATTTTCTTCATACAGGCAGTAGGATCATTTCCGGTTAGGGGAGAAACAGTGGCTAAACTCAAGGTGGCAATCAATGGATTTGGACGTATTGGCCGAAACTTCCTGCGGTGCTGGCATGGCAGGAAAGACTCGCCTCTCGAGGTTGTAGTTGTCAACGACAGTGGTGGTGTTAAGAATGCCTCCCACTTGCTAAAATATGATTCCATGCTGGGAACTTTCAAGGCAGAGGTGAAAATCGTAGACAATGAAACCATATCTGTTGATGGGAAGCCAATCAAGGTTGTCTCAAGCAGGGACCCCCTCAAGCTTCCTTGGGGCGAGTTAGGCATTGACATCGTTATTGAGGGTACAGGAGTGTTCGTGGATGGCCCAGGGGCAGGGAAACACATCCAAGCAGGTGCAAAGAAGGTTCTCATCACTGCTCCTGCAAAAGGTGCTGATATTCCAACATATGTTGTTGGTGTAAACGAAAAAGATTACTACCATGATGTTGCTAACATCATTAGCAATGCTTCTTGCACCACCAATTGCCTTGCTCCTTTTGTGAAGATCATTGATGAGGAATTTGGCATTGTGAAGGGAACGATGACAACCACTCACTCCTACACTGGAGACCAGAGACTTTTGGATGCATCACACCGTGACTTGAGACGAGCCAGGGCCGCAGCCTTGAACATTGTCCCCACAAGCACTGGTGCAGCAAAGGCCGTATCCCTTGTGCTGCCCCAGCTTAAGGGCAAGCTCAATGGTATTGCACTTCGTGTGCCTACTCCAAATGTTTCAGTTGTTGACCTCGTCGTGAACGTTGCGAAGAAAGGAATCTCCGCAGATGATGTCAATGCTGCCTTCAGAAAGGCAGCTGATGGACCATTGAAGGGCGTGCTAGCTGTGTGCGATATTCCTCTTGTTTCTGTGGACTTTAAGTGCACTGATGTTTCCTCCACAATTGACTCTTCATTAACAATGGTAATGGGAGATGATATGCTCAAGGTCGTGGCCTGGTACGACAATGAATGGGGATACAGCCAAAGAGTTGTGGACTTGGCTCATTTGGTGGCAAGCAAATGGCCGGGAGTGGGATCGGGAAAAAGTGGAGATCCGTTGGAGGACTTCTGCCAGACTAACCCAGCTGATGAAGAGTGCAAAGTTTATGAAGCTTAG 1380 48.48 MATHAALASTRIPTNTRFPSKTSYSFRPRCSSKRLDVAEFNGLRSACLTFSNNGREGSLFDVVAAQLTPKNRNIFFIQAVGSFPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVNDSGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKPIKVVSSRDPLKLPWGELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVLITAPAKGADIPTYVVGVNEKDYYHDVANIISNASCTTNCLAPFVKIIDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISADDVNAAFRKAADGPLKGVLAVCDIPLVSVDFKCTDVSSTIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLAHLVASKWPGVGSGKSGDPLEDFCQTNPADEECKVYEA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12948496 12951186 - CmaCh01G020290.1 Cma01g02029 287722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02029 459 Gene3D - 94 422 - -
Cma01g02029 459 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 92 262 IPR036291 -
Cma01g02029 459 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC 1 459 - -
Cma01g02029 459 SMART gp_dh_n_7 93 246 IPR020828 GO:0051287
Cma01g02029 459 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 251 408 IPR020829 GO:0016620
Cma01g02029 459 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 244 251 IPR020830 GO:0016620
Cma01g02029 459 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 267 283 IPR020831 GO:0016620
Cma01g02029 459 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 323 340 IPR020831 GO:0016620
Cma01g02029 459 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 240 258 IPR020831 GO:0016620
Cma01g02029 459 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 364 379 IPR020831 GO:0016620
Cma01g02029 459 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 202 215 IPR020831 GO:0016620
Cma01g02029 459 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 94 195 IPR020828 GO:0051287
Cma01g02029 459 Gene3D Dihydrodipicolinate Reductase; domain 2 245 410 - -
Cma01g02029 459 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 94 420 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cma01g02029 459 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 1 459 IPR020831 GO:0016620
Cma01g02029 459 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 246 409 - -
Cma01g02029 459 Pfam CP12 domain 437 458 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02029 K05298 GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13] - csv:101205112 815.453
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02029 Cma09g00036 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02029 Cma-Chr1:12948496 Cma11g01568 Cma-Chr11:10205099 1.15E-174 dispersed
Cma01g02029 Cma-Chr1:12948496 Cma09g00036 Cma-Chr9:164102 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g68 Blo01g01643 . . . Bpe02g00301 . . Bma01g02416 . . Cma01g02029 Cma09g00036 Car01g01596 . . Cpe06g00010 . . . . . . . . . . . . . . . . . Cone17ag1465 Cone20ag0011 Lsi04g01828 Csa04g02722 . . . . Bda11g00981 . . . . . Sed01g2415 Cmo01g02084 Cmo09g00037 . . . Car09g00031 . . Bhi09g02843 Tan01g5131 Cmetu07g0789 . Hepe01g2355 Mch11g0042 . Cla11g01837 Cam11g1904 Cec11g1931 Cco11g1940 Clacu11g2068 Cmu11g1874 Cre11g2282 . . Chy07g00409 Cme07g00039
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007528 1 1 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02029 Cma_Chr01 FPKM 9.058188 9.796988 234.129044 232.994446 255.777756 319.623505 252.813217 99.253845 95.240738 92.613869