Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02033 ATGCAGAAGGGACCCGAAGATGGAAGAAGAAGCCGTGTGCGGTGCCTGTCCGTTTCTGTGTCTCTCAAGCTTCTGTGCCCAGAAAATTTTGCCTGGCTCTCCATGCTCCACCCGCCGCTTTCTCTCGCCTATCGTATCTCCCAATATCTCCACCTCTTACTCTCTCAACTTTCTTCATGCTCCCCGCTTTTTCTCTTATCTGCTTCTCTTCTTCCTCCTCCTCCTGCACTTTTGGCTCCAACCTCATCAATGGCCACTCATCACGACACGCCGGAAACAAGGGATTCCAATACCCACCTTCTCCAGGAGCTTGAGGCACTCAGCCAAACGCTCTACCAAACCCACACCTCCTCCACTACTCGAAGAACAGCCTCGCTTGTTCTTCCTCGGACCTCTCTTCCTTCTATTCCCTCTTCTGAAGATGTGAGGGCCATCCACACAATCAACAAGCCCCGGTCCCGGCGCATGTCTCTCTCGCCATGGCGTTCCCCCGCCAAGCTCGATGACGATCATTACTCCCAATCCCAACCAAACACGGTTTCTTCTAATCAGCCGGAGCTGAGGAAGTTGGATGAAGCCGCCCCCGAGAAGAAGGGGATTTGGAATTGGAAGCCTATTCGGGCTCTCGCCCACATCGGAATGCAGAAGATTAGTTGCTTGTTCTCTGTTGAAGTCGTCACCGTTCAGGGCCTTCCCGCCTCCATGAATGGGCTTCGACTTTCCGTTTGCGTGAGGAAGAAAGAGACCAAAGATGGAGCAGTCAACACAATGCCGTCTAGGGTTTCGCAAGGCGCTGCGGATTTTGAAGAGACACTGTTCCTCAAATCTCACGTTTATTGCACTTCTGGTAACGGAAAGCCTCTCAAATTCGAGCCTCGTCCGTTTTGGATTTACGCTTTCGCTGTAGATGCTCAAGAGCTTGATTTCGGGAGAAGTGCAGTGGATTTGAGTAAGCTGATTGAAGAATCCATGGAGAAGAGTAGCGAAGGAACGCGAGTTCGACAGTGGGATATAAGCTTCAATTTGGCGGGGAAAGCTAAAGGAGGAGAACTCGTCGTCAAATTAGGCTTCCAGATTATGGAGAAAGACGGAGGAGTTGGAATTTACAGTCAAGCTCAGTCGAAGGATTCCAAATCGGGAAAATCTTACGGGAGAAAGCAATCGAAGACCTCCTTCAGCGTTCCTAGTCCCAGATTAACTGCTCAAACCGAAGCGTGGACACCTTCGCAAACAAGAGCGACAACTGATCATACAGGAATGGATGATCTGAACTTGGATGAACCAGCACCGATTCCGTCAACTCCCCCGTCCATTCAGAAATCAGAAGAACCGAATATTGAAGATTTCGATCTCCCAGACTTTCAAGTTGTCGACAAAGGAGTTGAGATTCAGGACAAAGGGGAAGAAGTGGACAAAGAAGAATCTGAAAAATCCATGGAAGAAAAGTCGACTTCAAGTGAGGTAGTCAAGGAGGTTGTACACGATCAGGCTCATTTGAATCGATTATCGGAACTCGATTCCATTGCACAGCAAATAAAAGCTCTGGAATCAATGATGGGAGATGAAAATCTGGGCAAAAACGATGAAGAATCCGATTCGCAGAGGCTTGATGCCGATGAAGAAAACGTAACAAGGGAATTTCTGCAGATGCTCGAGGAAGAAGACGGGGATGGCTCATACAAAAAAGACAGCAAACTCGATTACCCTGAAAACCGTCGTTACCAACTTGAAGAAACAGAGGATTCCTCTGAAATTGAATCCAAATCGTACCTTTCAGACCTTGGAAAGGGGCTGGGCTGCGTTGTTCAAACCAGAGATGGAGGCTACTTAGCCGCCATGAATCCATTAAACACCCAAGTTTCAAGGAAGGACACTCCAAAACTAGCGATGCAGATATCGAAACCGTTCATTTTAGCCTCCACAGGGTCGCTGAGTGGATTCGAGTTGTTTCAGAGAATGACTTGCAGCGGGGTCGAGGAACTGAGCTCCAAAGTAATGGGATTGATTTCTACGGATGAACTGATGGGCAAAACAGCAGAACAAATAGCATTCGAAGGAATTGCTTCGGCAATAATTCAAGGGAGAAACAAAGAAGGAGCAAGTTCCACCGCTGCCCGCGCCATTGCTGCAGTAAAATCAATGGTGACCGCATTGAGTACGGGAAGGAAAGAGAGGATTTCGACAGGAATTTGGAACTTAAACGAAATCCCTCTAACCATCGAAGAGATTCTAGCCTTCTCTTTGCAAAAGCTCGAAGAAATGAGCGTGGAAGCCTTGAAAATCCAGGCCGAAATGGCGGAGGAAGAAGCCCCATTTGACGTCTCGTCTCTGAATGTGAAAATTGGAGGAAAGGATCAAAATCAAATACACCCCCTGGATTGTGCAGTTCCGTACGAAGACTGGATGAATAAATTCAACTTCACTAAATTTGCAAGCCAATTGGAAGATCCAGAATCCATCACACTGGCGGTGGTGGTGCAGTTAAGAGACCCACTAAGGCGATACGAAGCCGTGGGAGGTCCTGTGGTGGGTCTGATTCACGCCAAGGAAGAAGAAATGGAAGAAAAATCAAGCAAATACGAAGAGGAAAGAAGATTCAAGGTGACGAGCTTGCACGTGGGTGGGTTGAAGGTGAGGGGCGGAGGGAAGAGGAACGCGTGGGACAGCGAAAAGCAGAGGCTGACGGCGATGCAGTGGCTAGTGGCGCATGGGATTGGGAAGGCGGTGAAGAAGGGAAAGCATTTATCATCCAAGGGACCAGATTTACTTTGGAGCTTGTCGTCGAGGGTAATGGCGGACATGTGGCTCAAACCTATACGAAACCCGGATGTAAAGTTTGTGAACTAG 2847 48.44 MQKGPEDGRRSRVRCLSVSVSLKLLCPENFAWLSMLHPPLSLAYRISQYLHLLLSQLSSCSPLFLLSASLLPPPPALLAPTSSMATHHDTPETRDSNTHLLQELEALSQTLYQTHTSSTTRRTASLVLPRTSLPSIPSSEDVRAIHTINKPRSRRMSLSPWRSPAKLDDDHYSQSQPNTVSSNQPELRKLDEAAPEKKGIWNWKPIRALAHIGMQKISCLFSVEVVTVQGLPASMNGLRLSVCVRKKETKDGAVNTMPSRVSQGAADFEETLFLKSHVYCTSGNGKPLKFEPRPFWIYAFAVDAQELDFGRSAVDLSKLIEESMEKSSEGTRVRQWDISFNLAGKAKGGELVVKLGFQIMEKDGGVGIYSQAQSKDSKSGKSYGRKQSKTSFSVPSPRLTAQTEAWTPSQTRATTDHTGMDDLNLDEPAPIPSTPPSIQKSEEPNIEDFDLPDFQVVDKGVEIQDKGEEVDKEESEKSMEEKSTSSEVVKEVVHDQAHLNRLSELDSIAQQIKALESMMGDENLGKNDEESDSQRLDADEENVTREFLQMLEEEDGDGSYKKDSKLDYPENRRYQLEETEDSSEIESKSYLSDLGKGLGCVVQTRDGGYLAAMNPLNTQVSRKDTPKLAMQISKPFILASTGSLSGFELFQRMTCSGVEELSSKVMGLISTDELMGKTAEQIAFEGIASAIIQGRNKEGASSTAARAIAAVKSMVTALSTGRKERISTGIWNLNEIPLTIEEILAFSLQKLEEMSVEALKIQAEMAEEEAPFDVSSLNVKIGGKDQNQIHPLDCAVPYEDWMNKFNFTKFASQLEDPESITLAVVVQLRDPLRRYEAVGGPVVGLIHAKEEEMEEKSSKYEEERRFKVTSLHVGGLKVRGGGKRNAWDSEKQRLTAMQWLVAHGIGKAVKKGKHLSSKGPDLLWSLSSRVMADMWLKPIRNPDVKFVN 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12966779 12969625 - CmaCh01G020330.1 Cma01g02033 287726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02033 948 MobiDBLite consensus disorder prediction 520 585 - -
Cma01g02033 948 ProSiteProfiles C2 NT-type domain profile. 209 359 IPR019448 -
Cma01g02033 948 MobiDBLite consensus disorder prediction 170 186 - -
Cma01g02033 948 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 88 947 IPR039614 -
Cma01g02033 948 MobiDBLite consensus disorder prediction 464 490 - -
Cma01g02033 948 MobiDBLite consensus disorder prediction 522 585 - -
Cma01g02033 948 MobiDBLite consensus disorder prediction 153 187 - -
Cma01g02033 948 MobiDBLite consensus disorder prediction 371 418 - -
Cma01g02033 948 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1 88 947 IPR033343 GO:0009902
Cma01g02033 948 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 214 331 IPR019448 -
Cma01g02033 948 MobiDBLite consensus disorder prediction 371 447 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02033 - - - bhj:120087008 1438.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02033 Cma09g00032 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02033 Cma-Chr1:12966779 Cma10g00758 Cma-Chr10:3453899 3.14E-24 dispersed
Cma01g02033 Cma-Chr1:12966779 Cma09g00032 Cma-Chr9:148346 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g56 . . . . . . . . . . Cma01g02033 Cma09g00032 Car01g01601 . . Cpe06g00007 . . . . . . . . . . . . . . . . . . . . Csa04g02729 . . . Blo18g00735 . Bda01g01571 Bpe02g01765 . . . Sed12g2182 Cmo01g02088 Cmo09g00033 . . . Car09g00027 . Cpe02g00020 Bhi09g02837 Tan01g5147 Cmetu07g1999 . . Mch11g0039 . Cla11g01842 Cam11g1910 Cec11g1935 Cco11g1947 Clacu11g2073 Cmu11g1879 Cre11g2287 . . Chy07g00415 Cme07g00034
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007845 1 1 1 0 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02033 Cma_Chr01 FPKM 2.785388 3.146182 10.548524 9.832796 13.873161 12.04308 12.317349 11.184785 11.54905 10.114009