Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02036 ATGGCTCTGCCTAAGTCACTGCTTCTAGCGCTATGCGTGTGCGTTTTTGTCGTAGCAAGTTGTGGGAAGGACTTTTCAATCGTGGGTTACTCAGCAGAAGACTTAACTTCCATGGATAAACTTATTGAGCTCTTTGAAGAATGGATATCAAAGCACGGCAAGATTTATGAGACCATCGAAGAAAAGTGGAATAGATTTGAGGTGTTCAAAGACAACTTGAAGCACATTGATGAAACAAACAAGAAAGTGAGTAGTTATTGGCTTGGACTTAATGAGTTTGCTGATTTAACCCACCAAGAGTTCCAAAAGATGTATCTTGGCCTGAAAGTTGAGTCGTCTCGAACAAGGCAATCCCCAGAAGAGTTCACCTACAAGGATATTGTAGATTTGCCCAAGTCGGTGGATTGGAGAAAGAAAGGAGCTGTGACTCGTGTCAAGAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCCACTGTTGCTGCAGTTGAGGGGATAAATAAGATTGTTGCTGGAAATTTGACCTCGTTATCAGAGCAGGAACTAGTTGATTGCGATAGACCTTATAACAATGGGTGCCATGGGGGCCTCATGGACTACGCATTCTCTTTTATTGTCTCTAGTGGTGGACTTCACAAGGAAGAAGACTACCCTTATCTCGAGGAAGAAAGCACTTGCGAGAACAAAAAGGGGGAACTGGAGGTAGTGACAATCTCTGGCTATAAGGACGTACCAGAGAACAATGAAGCCAGCCTCATAAAGGCATTGGCACACCAGCCACTCAGCGTGGCCATAGAAGCTTCAGGAAGAGATTTCCAATTCTACAGCGGGGGCATTTTCGACGGACCCTGTGGAACAGAGCTTGATCATGGAGTCGCAGCCGTTGGATATGGATCATCAAAGGGAGTGGACTACATCATTTCGTCATACGCACCTGGAACTGCAGCCACCATAAGAATCACCATCAAGTATCGAGAACCTTGCACTCCCGCGATGATAGGTCCACTTGCCGATGGGCAGCAGGGGGAAGCAGAAGGAACTGAAAAGCCGAAGACTCGAAACATTACGGCTGCGTCCACGGCAGAGTCCATCATCGTGACCGTGAGGGTGGCTTTTCTGATGAAAAAGCGAACAGAAACGAAAAGCATCCGTGAAAAGGGCGGTCGCAGCAATTACGATGAGTTTGAAAGGGGAATAGAGGAGACTAACGTTGTTCTTCGGCTGTGGTCTCAGACAGTTGAGTTCAAAGTAGATATGGTCGGAATCCACGAGAAAAGGCTCAGGAAATGTCTGTACAAATTGAAAGGTGTGGAGAAGGTGGAGGTGGATGCGAACAGCCAGAAGGTGGCGGTGACCAGCTACATTCACCGGAACAAGATACTGAAAGCGATGAGGAGAAGTGGCCTGAAAGCCGATTTCTGGTCGGCCCAAAACGAGCTTCTTAATGCATACGCCGCCACTTATGGAGCCTTCAGATTCTGCTCCTACAACACCTTCTTTTAG 1503 47.04 MALPKSLLLALCVCVFVVASCGKDFSIVGYSAEDLTSMDKLIELFEEWISKHGKIYETIEEKWNRFEVFKDNLKHIDETNKKVSSYWLGLNEFADLTHQEFQKMYLGLKVESSRTRQSPEEFTYKDIVDLPKSVDWRKKGAVTRVKNQGSCGSCWAFSTVAAVEGINKIVAGNLTSLSEQELVDCDRPYNNGCHGGLMDYAFSFIVSSGGLHKEEDYPYLEEESTCENKKGELEVVTISGYKDVPENNEASLIKALAHQPLSVAIEASGRDFQFYSGGIFDGPCGTELDHGVAAVGYGSSKGVDYIISSYAPGTAATIRITIKYREPCTPAMIGPLADGQQGEAEGTEKPKTRNITAASTAESIIVTVRVAFLMKKRTETKSIREKGGRSNYDEFERGIEETNVVLRLWSQTVEFKVDMVGIHEKRLRKCLYKLKGVEKVEVDANSQKVAVTSYIHRNKILKAMRRSGLKADFWSAQNELLNAYAATYGAFRFCSYNTFF 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12979552 12983585 + CmaCh01G020360.1 Cma01g02036 287729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02036 500 CDD HMA 414 471 IPR006121 GO:0046872
Cma01g02036 500 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Cma01g02036 500 SMART pept_c1 130 331 IPR000668 GO:0006508|GO:0008234
Cma01g02036 500 SMART Inhibitor_I29_2 45 101 IPR013201 -
Cma01g02036 500 Pfam Papain family cysteine protease 130 307 IPR000668 GO:0006508|GO:0008234
Cma01g02036 500 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Cma01g02036 500 SUPERFAMILY HMA, heavy metal-associated domain 424 479 IPR036163 GO:0046872
Cma01g02036 500 Gene3D Cysteine proteinases 24 310 - -
Cma01g02036 500 SUPERFAMILY Cysteine proteinases 40 307 IPR038765 -
Cma01g02036 500 Pfam Cathepsin propeptide inhibitor domain (I29) 45 101 IPR013201 -
Cma01g02036 500 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cma01g02036 500 PANTHER CYSTEINE PROTEASE XCP1-LIKE 22 312 - -
Cma01g02036 500 CDD Peptidase_C1A 131 307 IPR039417 -
Cma01g02036 500 Gene3D - 409 472 - -
Cma01g02036 500 PRINTS Papain cysteine protease (C1) family signature 290 300 IPR000668 GO:0006508|GO:0008234
Cma01g02036 500 PRINTS Papain cysteine protease (C1) family signature 148 163 IPR000668 GO:0006508|GO:0008234
Cma01g02036 500 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 22 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02036 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - csv:101205826 580.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02036 Cma-Chr1:12979552 Cma11g01323 Cma-Chr11:8782232 1.38E-157 dispersed
Cma01g02036 Cma-Chr1:12979552 Cma11g01732 Cma-Chr11:11510182 2.27E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g49 Blo01g01647 . . . . . . Bma01g02420 . . Cma01g02036 . Car01g01606 . . Cpe06g00004 . . . . . . . . . . . . . . . Cone4ag2037 . . . Lsi04g02419 Csa04g02736 . . . . Bda11g00987 . . . . . Sed05g1024 Cmo01g02095 Cmo09g00028 . . . Car09g00024 . Cpe02g00016 Bhi09g02832 Tan01g5153 Cmetu07g0142 . Hepe01g2366 Mch11g0032 . Cla11g01849 Cam11g1915 Cec11g1940 Cco11g1954 Clacu11g2080 Cmu11g1884 Cre11g2292 . . Chy07g00423 Cme07g00026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02036 Cma_Chr01 FPKM 23.881781 25.434225 4.835137 4.516221 12.006919 11.828883 12.246536 0.0 0.0 0.0