Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g02039 | ATGACGGGATCTGAGACCGGAGTGATGACCAGCGGCGAACCCTTCACCATCGGTTTCCAGAAGAGTCCAGTACAGTCACAACAGTCGGTCTTGCCTGGCTTGCATTTGCCCTTCGGCGCCGACGGCGTCTACAAGCCCGCCTCCTCCGTCTCGCCCACCTACCAGTCCCCCGGCGTCGGTGTTTCCGGTAATGCCGGTGCCGATGTTTCTCCTCGTGAAGCTTTCGTTGGCATGAATACGCAAAGCGAGCCTGTCAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGGGCCAGATGGCAGTATGGCAGTGGCCTCTGCAGACCCCTCCGCCGCTGCAACTCAGTCCGGTGGAGGTTTCTCTCCTCCACCCACTGGCGTGACTCCGTCGGGAGGATCAGCCTCTCCAACTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTGGCAAAAAGCAGCAGCTGGATGCCTTGGGATCAGCCGGAGTTGGATTTACCCCACATGTCATCACCGTGAAAGCTGGAGAGGACGTGTCTTCAAAAATAATGTCAATCTCACAGAATGGTCCTAGAGCTGTTTGTATTCTTTCAGCAAATGGAGCTATATCCAACGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTATGAGGGGCGATTTGAGATTTTGTCACTATCTGGGTTATATCTTCTCACCGAGAATGGTGGTCAGCGTAGCCGAACTGGGGATTTAAGTGTTTCATTGTCTGGACCAGATGGTAGAGTTTTGGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCCTCTCCCGTTCAGGTGGTGGTGGGGAGCTTTGTGAACGATGGGGGGCAGAAGGAGTTGAAACAAGCAAACCAAATAGAACAGCGGCCTGTTACTGCACCACATAAACTCGCTCCGATCCGTGCTGGAATGACAGGGGCGAGCAGTCCGCAATCACGTGGGGCTCTCAGTGAATCCTCAGGAGGGCAAGGGAGTCCGTTTAATCAGAGTGGTGGAGCCTGCAATAACACCGCATCTTGGAAGTGA | 1047 | 54.82 | MTGSETGVMTSGEPFTIGFQKSPVQSQQSVLPGLHLPFGADGVYKPASSVSPTYQSPGVGVSGNAGADVSPREAFVGMNTQSEPVKRKRGRPRKYGPDGSMAVASADPSAAATQSGGGFSPPPTGVTPSGGSASPTLKKARGRPPGSGKKQQLDALGSAGVGFTPHVITVKAGEDVSSKIMSISQNGPRAVCILSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGLYLLTENGGQRSRTGDLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVNDGGQKELKQANQIEQRPVTAPHKLAPIRAGMTGASSPQSRGALSESSGGQGSPFNQSGGACNNTASWK | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12986204 | 12989715 | - | CmaCh01G020390.1 | Cma01g02039 | 287732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g02039 | 348 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cma01g02039 | 348 | Gene3D | - | 165 | 298 | - | - | |
Cma01g02039 | 348 | ProSiteProfiles | PPC domain profile profile. | 159 | 299 | IPR005175 | - | |
Cma01g02039 | 348 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 | 15 | 344 | - | - | |
Cma01g02039 | 348 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 165 | 280 | IPR005175 | - | |
Cma01g02039 | 348 | MobiDBLite | consensus disorder prediction | 312 | 348 | - | - | |
Cma01g02039 | 348 | SMART | AT_hook_2 | 138 | 150 | IPR017956 | GO:0003677 | |
Cma01g02039 | 348 | SMART | AT_hook_2 | 86 | 98 | IPR017956 | GO:0003677 | |
Cma01g02039 | 348 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 15 | 344 | IPR039605 | GO:0003680 | |
Cma01g02039 | 348 | MobiDBLite | consensus disorder prediction | 107 | 134 | - | - | |
Cma01g02039 | 348 | CDD | DUF296 | 164 | 278 | IPR005175 | - | |
Cma01g02039 | 348 | MobiDBLite | consensus disorder prediction | 41 | 153 | - | - | |
Cma01g02039 | 348 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 163 | 289 | - | - | |
Cma01g02039 | 348 | MobiDBLite | consensus disorder prediction | 309 | 348 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g02039 | Cma05g00961 | CCT | |
Cma01g02039 | Cma12g00694 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g02039 | Cma-Chr1:12986204 | Cma09g00027 | Cma-Chr9:137993 | 1.86E-67 | dispersed | |
Cma05g01229 | Cma-Chr5:9438060 | Cma01g02039 | Cma-Chr1:12986204 | 2.69E-54 | dispersed | |
Cma18g01194 | Cma-Chr18:9477137 | Cma01g02039 | Cma-Chr1:12986204 | 6.26E-55 | dispersed | |
Cma19g00241 | Cma-Chr19:1705112 | Cma01g02039 | Cma-Chr1:12986204 | 7.37E-57 | dispersed | |
Cma03g01179 | Cma-Chr3:7877999 | Cma01g02039 | Cma-Chr1:12986204 | 2.10E-17 | transposed | |
Cma01g02039 | Cma-Chr1:12986204 | Cma12g00694 | Cma-Chr12:3753696 | 1.60E-100 | wgd | |
Cma01g02039 | Cma-Chr1:12986204 | Cma05g00961 | Cma-Chr5:7769242 | 2.22E-106 | wgd | |
Cma01g02039 | Cma-Chr1:12986204 | Cma09g00026 | Cma-Chr9:137313 | 1.65E-14 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g02039 | - | - | csv:101207513 | 501.13 |