Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02039 ATGACGGGATCTGAGACCGGAGTGATGACCAGCGGCGAACCCTTCACCATCGGTTTCCAGAAGAGTCCAGTACAGTCACAACAGTCGGTCTTGCCTGGCTTGCATTTGCCCTTCGGCGCCGACGGCGTCTACAAGCCCGCCTCCTCCGTCTCGCCCACCTACCAGTCCCCCGGCGTCGGTGTTTCCGGTAATGCCGGTGCCGATGTTTCTCCTCGTGAAGCTTTCGTTGGCATGAATACGCAAAGCGAGCCTGTCAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGGGCCAGATGGCAGTATGGCAGTGGCCTCTGCAGACCCCTCCGCCGCTGCAACTCAGTCCGGTGGAGGTTTCTCTCCTCCACCCACTGGCGTGACTCCGTCGGGAGGATCAGCCTCTCCAACTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTGGCAAAAAGCAGCAGCTGGATGCCTTGGGATCAGCCGGAGTTGGATTTACCCCACATGTCATCACCGTGAAAGCTGGAGAGGACGTGTCTTCAAAAATAATGTCAATCTCACAGAATGGTCCTAGAGCTGTTTGTATTCTTTCAGCAAATGGAGCTATATCCAACGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTATGAGGGGCGATTTGAGATTTTGTCACTATCTGGGTTATATCTTCTCACCGAGAATGGTGGTCAGCGTAGCCGAACTGGGGATTTAAGTGTTTCATTGTCTGGACCAGATGGTAGAGTTTTGGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCCTCTCCCGTTCAGGTGGTGGTGGGGAGCTTTGTGAACGATGGGGGGCAGAAGGAGTTGAAACAAGCAAACCAAATAGAACAGCGGCCTGTTACTGCACCACATAAACTCGCTCCGATCCGTGCTGGAATGACAGGGGCGAGCAGTCCGCAATCACGTGGGGCTCTCAGTGAATCCTCAGGAGGGCAAGGGAGTCCGTTTAATCAGAGTGGTGGAGCCTGCAATAACACCGCATCTTGGAAGTGA 1047 54.82 MTGSETGVMTSGEPFTIGFQKSPVQSQQSVLPGLHLPFGADGVYKPASSVSPTYQSPGVGVSGNAGADVSPREAFVGMNTQSEPVKRKRGRPRKYGPDGSMAVASADPSAAATQSGGGFSPPPTGVTPSGGSASPTLKKARGRPPGSGKKQQLDALGSAGVGFTPHVITVKAGEDVSSKIMSISQNGPRAVCILSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGLYLLTENGGQRSRTGDLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVNDGGQKELKQANQIEQRPVTAPHKLAPIRAGMTGASSPQSRGALSESSGGQGSPFNQSGGACNNTASWK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12986204 12989715 - CmaCh01G020390.1 Cma01g02039 287732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02039 348 MobiDBLite consensus disorder prediction 1 28 - -
Cma01g02039 348 Gene3D - 165 298 - -
Cma01g02039 348 ProSiteProfiles PPC domain profile profile. 159 299 IPR005175 -
Cma01g02039 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 15 344 - -
Cma01g02039 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 280 IPR005175 -
Cma01g02039 348 MobiDBLite consensus disorder prediction 312 348 - -
Cma01g02039 348 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Cma01g02039 348 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Cma01g02039 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 344 IPR039605 GO:0003680
Cma01g02039 348 MobiDBLite consensus disorder prediction 107 134 - -
Cma01g02039 348 CDD DUF296 164 278 IPR005175 -
Cma01g02039 348 MobiDBLite consensus disorder prediction 41 153 - -
Cma01g02039 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 163 289 - -
Cma01g02039 348 MobiDBLite consensus disorder prediction 309 348 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02039 Cma05g00961 CCT
Cma01g02039 Cma12g00694 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02039 Cma-Chr1:12986204 Cma09g00027 Cma-Chr9:137993 1.86E-67 dispersed
Cma05g01229 Cma-Chr5:9438060 Cma01g02039 Cma-Chr1:12986204 2.69E-54 dispersed
Cma18g01194 Cma-Chr18:9477137 Cma01g02039 Cma-Chr1:12986204 6.26E-55 dispersed
Cma19g00241 Cma-Chr19:1705112 Cma01g02039 Cma-Chr1:12986204 7.37E-57 dispersed
Cma03g01179 Cma-Chr3:7877999 Cma01g02039 Cma-Chr1:12986204 2.10E-17 transposed
Cma01g02039 Cma-Chr1:12986204 Cma12g00694 Cma-Chr12:3753696 1.60E-100 wgd
Cma01g02039 Cma-Chr1:12986204 Cma05g00961 Cma-Chr5:7769242 2.22E-106 wgd
Cma01g02039 Cma-Chr1:12986204 Cma09g00026 Cma-Chr9:137313 1.65E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02039 - - csv:101207513 501.13