Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g02040 | ATGGAGAAGGGGCCGACCACTGTTTCAGCCATGGAGGCGTTCGAGAAGCTAGAGAAGGTCGGAGAAGGAACTTATGGCAAAGTTTATAGGGCAAGGGAGAAGGCCACCGGCAAGATTGTAGCGCTTAAGAAGACGCGCCTCCACGAGGACGAGGAAGGTGTTCCTCCCACTACTCTTAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCTCATATTGTTAGGTTGATGGATGTGAAACAAGGGCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATACATGGATACTGATCTGAAAAAATTCATCAAGAGTTTTCGTCATACGGGAGAAAGCATTCCCGTCAACACTGTCAAGAGTCTGATGTACCAACTCTGCAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCCTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACTATGATGCTCAAAATTGCAGACCTTGGACTCGCTCGAGCATTTACTTTGCCAATTAAGAAGTATACTCACGAGATACTGACCCTCTGGTATAGAGCTCCTGAAGTTCTGTTGGGAGCTACTCATTACTCCACTGCTGTAGATATATGGTCTGTTGGCTGCATATTCGCCGAACTTGCCACCAAGCAGGCGCTCTTTCCTGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCGAATGAAAAAGTTTGGCCTGGTGTGAGCAAACTAATGAACTGGCACGAGTATCCCCAGTGGAACCCCCAAAGCCTTTCAACAGCTGTCCCCAACTTGGATGATAAAGCGCTCGATCTGCTTGCACAAATGTTGAAGTATGAACCCTCAAAGCGTATTTCAGCGAAGAGAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGCATATCTCTGA | 939 | 46.96 | MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRHTGESIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGATHYSTAVDIWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWNPQSLSTAVPNLDDKALDLLAQMLKYEPSKRISAKRAMEHPYFDDLNKAYL | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 12990690 | 12992607 | + | CmaCh01G020400.1 | Cma01g02040 | 287733 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g02040 | 312 | ProSitePatterns | Protein kinases ATP-binding region signature. | 20 | 43 | IPR017441 | GO:0005524 | |
Cma01g02040 | 312 | PANTHER | CELL DIVISION PROTEIN KINASE | 7 | 310 | - | - | |
Cma01g02040 | 312 | Gene3D | Phosphorylase Kinase; domain 1 | 9 | 100 | - | - | |
Cma01g02040 | 312 | Gene3D | Transferase(Phosphotransferase) domain 1 | 102 | 311 | - | - | |
Cma01g02040 | 312 | SUPERFAMILY | Protein kinase-like (PK-like) | 9 | 308 | IPR011009 | - | |
Cma01g02040 | 312 | SMART | serkin_6 | 14 | 304 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g02040 | 312 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 141 | 153 | IPR008271 | GO:0004672|GO:0006468 | |
Cma01g02040 | 312 | ProSiteProfiles | Protein kinase domain profile. | 14 | 304 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g02040 | 312 | Pfam | Protein kinase domain | 14 | 304 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g02040 | 312 | PANTHER | - | 7 | 310 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g02040 | Cma-Chr1:12990690 | Cma04g01421 | Cma-Chr4:7262456 | 2.95E-107 | dispersed | |
Cma04g02007 | Cma-Chr4:12511061 | Cma01g02040 | Cma-Chr1:12990690 | 3.11E-13 | transposed | |
Cma07g01185 | Cma-Chr7:6510948 | Cma01g02040 | Cma-Chr1:12990690 | 1.52E-154 | transposed | |
Cma01g02040 | Cma-Chr1:12990690 | Cma09g00025 | Cma-Chr9:131662 | 2.16E-09 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68308 | PF00069 | Pkinase | 2.10E-72 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g02040 | K07760 | - | csv:101208001 | 618.231 |