Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02040 ATGGAGAAGGGGCCGACCACTGTTTCAGCCATGGAGGCGTTCGAGAAGCTAGAGAAGGTCGGAGAAGGAACTTATGGCAAAGTTTATAGGGCAAGGGAGAAGGCCACCGGCAAGATTGTAGCGCTTAAGAAGACGCGCCTCCACGAGGACGAGGAAGGTGTTCCTCCCACTACTCTTAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCTCATATTGTTAGGTTGATGGATGTGAAACAAGGGCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATACATGGATACTGATCTGAAAAAATTCATCAAGAGTTTTCGTCATACGGGAGAAAGCATTCCCGTCAACACTGTCAAGAGTCTGATGTACCAACTCTGCAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCCTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACTATGATGCTCAAAATTGCAGACCTTGGACTCGCTCGAGCATTTACTTTGCCAATTAAGAAGTATACTCACGAGATACTGACCCTCTGGTATAGAGCTCCTGAAGTTCTGTTGGGAGCTACTCATTACTCCACTGCTGTAGATATATGGTCTGTTGGCTGCATATTCGCCGAACTTGCCACCAAGCAGGCGCTCTTTCCTGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCGAATGAAAAAGTTTGGCCTGGTGTGAGCAAACTAATGAACTGGCACGAGTATCCCCAGTGGAACCCCCAAAGCCTTTCAACAGCTGTCCCCAACTTGGATGATAAAGCGCTCGATCTGCTTGCACAAATGTTGAAGTATGAACCCTCAAAGCGTATTTCAGCGAAGAGAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGCATATCTCTGA 939 46.96 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRHTGESIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGATHYSTAVDIWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWNPQSLSTAVPNLDDKALDLLAQMLKYEPSKRISAKRAMEHPYFDDLNKAYL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12990690 12992607 + CmaCh01G020400.1 Cma01g02040 287733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02040 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Cma01g02040 312 PANTHER CELL DIVISION PROTEIN KINASE 7 310 - -
Cma01g02040 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Cma01g02040 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
Cma01g02040 312 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Cma01g02040 312 SMART serkin_6 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g02040 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Cma01g02040 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g02040 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g02040 312 PANTHER - 7 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02040 Cma-Chr1:12990690 Cma04g01421 Cma-Chr4:7262456 2.95E-107 dispersed
Cma04g02007 Cma-Chr4:12511061 Cma01g02040 Cma-Chr1:12990690 3.11E-13 transposed
Cma07g01185 Cma-Chr7:6510948 Cma01g02040 Cma-Chr1:12990690 1.52E-154 transposed
Cma01g02040 Cma-Chr1:12990690 Cma09g00025 Cma-Chr9:131662 2.16E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68308 PF00069 Pkinase 2.10E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02040 K07760 - csv:101208001 618.231