Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02043 ATGGACGATACCCATAAGGCGGGGCAGGATTTGCTCCACGGCCCCGGCGCAGGTCTTGCTCAAAACCAAGTTCAAGTTCGGGAGCCAGGATTTGCAGTGACAAAGGAGGATCAGAACCTTAAAGAAGATGAGCAATCAGCCTGCCCAATGTTTAACGACTTTCACGAACTTCCTTGCCTTCAAAAACCGATTGAGGACGATGAGGATTTACCTGATCATACTGCCGTTGAAGCTGCTGCTGCTGATGCTAAAGTTGTGGAGGTTGCTCTGGATGAACCGCCTGAAAGTAAAGAAGATGCCATGGAGACTGATCCTCCAATTGGGAACGAAGATAATCCTTCTGCACCTCCCATTTCACCTGACATCTCTCTGCCTTCAAATGCCGCAAATCAGAGTGCGGCACTCGTGAAGAATGCATGGATTGATATTGAAATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGCATTTATGAAGGAGATCGAAAATTTCCACCGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAATTATGGCGACAAGTTGGAGAGTCTTTCCATCCCCCAAAAACATGCACGACAGTCTCTTGGACATTTCGCATTTTCTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAAAGACTAACGGGGGAACTGCAACTACCTGTTGGATCCCTTCCTCAGTCTACAAATACAGAAAAGGAGACTGGCTACTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAACGTCTGGTTGGATATGGCGAGGATGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAAAATCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAACACAGACCACGTTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAACAGTTATGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCTCCTTTTGAGCAAGGATCCATGTGA 1362 47.06 MDDTHKAGQDLLHGPGAGLAQNQVQVREPGFAVTKEDQNLKEDEQSACPMFNDFHELPCLQKPIEDDEDLPDHTAVEAAAADAKVVEVALDEPPESKEDAMETDPPIGNEDNPSAPPISPDISLPSNAANQSAALVKNAWIDIEMAEGDESGTPEDRVAFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLTGELQLPVGSLPQSTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEDAEPIIKDKNLGSTSKREKNLKNIGFPKHKMLTNTDHVGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12993973 12997984 + CmaCh01G020430.1 Cma01g02043 287736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02043 453 MobiDBLite consensus disorder prediction 91 126 - -
Cma01g02043 453 SUPERFAMILY HSP20-like chaperones 360 448 IPR008978 -
Cma01g02043 453 MobiDBLite consensus disorder prediction 1 23 - -
Cma01g02043 453 SUPERFAMILY ARID-like 152 250 IPR036431 GO:0003677
Cma01g02043 453 MobiDBLite consensus disorder prediction 255 269 - -
Cma01g02043 453 CDD ACD_sHsps-like 367 447 - -
Cma01g02043 453 Gene3D - 155 252 IPR036431 GO:0003677
Cma01g02043 453 SMART bright_3 155 246 IPR001606 GO:0003677
Cma01g02043 453 SMART ARID_2 151 241 - -
Cma01g02043 453 Pfam ARID/BRIGHT DNA binding domain 158 241 IPR001606 GO:0003677
Cma01g02043 453 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 106 450 - -
Cma01g02043 453 Gene3D - 342 452 IPR008978 -
Cma01g02043 453 CDD ARID 156 241 - -
Cma01g02043 453 ProSiteProfiles ARID domain profile. 154 245 IPR001606 GO:0003677
Cma01g02043 453 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 352 453 IPR002068 -
Cma01g02043 453 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 106 450 IPR045147 GO:0006357
Cma01g02043 453 MobiDBLite consensus disorder prediction 255 275 - -
Cma01g02043 453 Pfam Hsp20/alpha crystallin family 369 448 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02043 - - - zju:107416079 536.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02043 Cma-Chr1:12993973 Cma06g00173 Cma-Chr6:852031 8.40E-77 dispersed
Cma01g02043 Cma-Chr1:12993973 Cma16g01291 Cma-Chr16:9774416 1.02E-138 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g36 . . . . . . . . . . Cma01g02043 . Car01g01610 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01577 . . Bma01g00689 . . Cmo01g02101 . . . . . . Cpe02g00012 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00095 . 1 358 ARID Transcription Factor Family AT1G04880 56.8 2.5e-106 383.3
Cma08g01025 . 60 399 ARID Transcription Factor Family AT1G04880 60.3 1.2e-105 380.9
Cma01g02043 . 141 420 ARID Transcription Factor Family AT1G20910 67.5 2.2e-103 373.2
Cma16g01291 . 163 432 ARID Transcription Factor Family AT1G20910 60.3 2.7e-88 323.2
Cma09g00079 CST 16 315 ARID Transcription Factor Family AT1G76110 67.0 1.3e-112 403.7
Cma01g01993 CST 16 312 ARID Transcription Factor Family AT1G76110 65.3 3.6e-110 395.6
Cma01g02043 . 140 450 ARID Transcription Factor Family AT1G76510 72.8 1.6e-126 450.3
Cma16g01291 . 154 462 ARID Transcription Factor Family AT1G76510 61.6 8.2e-107 384.8
Cma01g00017 . 1 785 ARID Transcription Factor Family AT3G43240 58.4 6.1e-259 891.0
Cma14g01215 . 1 782 ARID Transcription Factor Family AT3G43240 57.9 6.1e-259 891.0
Cma17g00656 . 2 771 ARID Transcription Factor Family AT3G43240 56.9 1.3e-253 873.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34391 PF00011 HSP20 0.00015 CL0190 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02043 Cma_Chr01 FPKM 3.046623 3.487475 7.557164 7.445793 9.334834 9.784103 8.563232 11.546255 10.792601 10.051948