Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02043 ATGGACGATACCCATAAGGCGGGGCAGGATTTGCTCCACGGCCCCGGCGCAGGTCTTGCTCAAAACCAAGTTCAAGTTCGGGAGCCAGGATTTGCAGTGACAAAGGAGGATCAGAACCTTAAAGAAGATGAGCAATCAGCCTGCCCAATGTTTAACGACTTTCACGAACTTCCTTGCCTTCAAAAACCGATTGAGGACGATGAGGATTTACCTGATCATACTGCCGTTGAAGCTGCTGCTGCTGATGCTAAAGTTGTGGAGGTTGCTCTGGATGAACCGCCTGAAAGTAAAGAAGATGCCATGGAGACTGATCCTCCAATTGGGAACGAAGATAATCCTTCTGCACCTCCCATTTCACCTGACATCTCTCTGCCTTCAAATGCCGCAAATCAGAGTGCGGCACTCGTGAAGAATGCATGGATTGATATTGAAATGGCTGAGGGTGACGAATCGGGGACACCAGAGGATAGGGTGGCATTTATGAAGGAGATCGAAAATTTCCACCGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAACTGCCTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAATTATGGCGACAAGTTGGAGAGTCTTTCCATCCCCCAAAAACATGCACGACAGTCTCTTGGACATTTCGCATTTTCTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAAAGACTAACGGGGGAACTGCAACTACCTGTTGGATCCCTTCCTCAGTCTACAAATACAGAAAAGGAGACTGGCTACTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAACGTCTGGTTGGATATGGCGAGGATGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAGCGTGAAAAAAATCTCAAGAACATTGGTTTTCCAAAACACAAGATGCTAACTAACACAGACCACGTTGGAAGAGATGCAGATTTTGAATCAGACAAGCAAGTGATGACAACAGTTATGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGACTGCTTTGAAGTATATGCATTAGTTCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACGCCTTTTAAAAAGGTGGTGAGCTTACCCACAAGAATTGATCCTCTTCAGACATCTGCCGTGGTGAGCCTTCATGGCCGACTTTTTGTGCGAGCTCCTTTTGAGCAAGGATCCATGTGA 1362 47.06 MDDTHKAGQDLLHGPGAGLAQNQVQVREPGFAVTKEDQNLKEDEQSACPMFNDFHELPCLQKPIEDDEDLPDHTAVEAAAADAKVVEVALDEPPESKEDAMETDPPIGNEDNPSAPPISPDISLPSNAANQSAALVKNAWIDIEMAEGDESGTPEDRVAFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRLTGELQLPVGSLPQSTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEDAEPIIKDKNLGSTSKREKNLKNIGFPKHKMLTNTDHVGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPTRIDPLQTSAVVSLHGRLFVRAPFEQGSM 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12993973 12997984 + CmaCh01G020430.1 Cma01g02043 287736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02043 453 MobiDBLite consensus disorder prediction 91 126 - -
Cma01g02043 453 SUPERFAMILY HSP20-like chaperones 360 448 IPR008978 -
Cma01g02043 453 MobiDBLite consensus disorder prediction 1 23 - -
Cma01g02043 453 SUPERFAMILY ARID-like 152 250 IPR036431 GO:0003677
Cma01g02043 453 MobiDBLite consensus disorder prediction 255 269 - -
Cma01g02043 453 CDD ACD_sHsps-like 367 447 - -
Cma01g02043 453 Gene3D - 155 252 IPR036431 GO:0003677
Cma01g02043 453 SMART bright_3 155 246 IPR001606 GO:0003677
Cma01g02043 453 SMART ARID_2 151 241 - -
Cma01g02043 453 Pfam ARID/BRIGHT DNA binding domain 158 241 IPR001606 GO:0003677
Cma01g02043 453 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 106 450 - -
Cma01g02043 453 Gene3D - 342 452 IPR008978 -
Cma01g02043 453 CDD ARID 156 241 - -
Cma01g02043 453 ProSiteProfiles ARID domain profile. 154 245 IPR001606 GO:0003677
Cma01g02043 453 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 352 453 IPR002068 -
Cma01g02043 453 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 106 450 IPR045147 GO:0006357
Cma01g02043 453 MobiDBLite consensus disorder prediction 255 275 - -
Cma01g02043 453 Pfam Hsp20/alpha crystallin family 369 448 IPR002068 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02043 Cma-Chr1:12993973 Cma06g00173 Cma-Chr6:852031 8.40E-77 dispersed
Cma01g02043 Cma-Chr1:12993973 Cma16g01291 Cma-Chr16:9774416 1.02E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34391 PF00011 HSP20 0.00015 CL0190 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02043 - - zju:107416079 536.569