Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02048 ATGGAAGACGCTACAATACAGGAATTGGACCCAGAAACTGAATTCCTTTTCTCCAAGCGGAAAACTGAGAACGATTGGGAACTCTTCAAAGAGAACGTCAGACCTCTGAAGAGAGGTCGCAATATCAGCATCTTGAACAATGCCCTCAAGTCCCATACTGATAATCATCTCAAGAAATCCCTTCTTGATAACCGAAGGAAGTTGATTGAGGCTATCGACGACTACAAAGGTGACGATCCCCTGCAGCCATGGCTCGAGTGTATTAAATGGGTTCAAGAGGCATATCCAGCTGGGGGTGATTTCTCTGGACTTGTTTTGATATATGAACAATGTGTGCGGAATTTTTGGCATTCAGATCGCTACAAGGAGGATCTTCGTTATTTGAAAGTGTGGTTGGAATATGCTGAAAATTGTTTTGATGCCGAAGTCATATTTAATTTTCTGCACGCAAATGAAATTGGGACGACGCATTCTGCTTATTACATAGCATATGCTCTTCATTTGGAGTCTAAATCTAAATCAAAGGCTGCAAATGACATGTTTAATCTTGGTATCTCAAGGAATGCTCATCCAATAGATAAATTGAAGGATGCTTATAGAATGTTTCTCTTGCGCACAATGCAAAGACCAAAAGCTGCAGATGAGTCGGTGGAAAAATGCTTACCAGTTCGTAGCTTTGGAACTGTGCTTCCCAATCCAGGAATGCTGACAATGGGCAATGTCGATCGTTCCAGGAAAAACATGAAGCCTGAAAGGTCATATCTAGCTCCACTTGATGTTTATGATGATTCAAAAGTCGCCGTTACTTCACACCATGAACCAGATGTTTCAAAGGCACATTTGAATTCTTGGACAGTATTGGGGAGTCGAAGGGAGAGAAACAAAGAAAACAATGCACCTCCTTCCAAATGGACTTCCCACAAGATACCGCAAAGGATTGGATCCAGGATTGGAGGATCGAATGCAAATGCACCTATAGAGGTGTTTGTGGACGAGGAATGCGAAGAGGCGCATAAACTGGAACATGAAGAAAGTCGCAAGTCTTCAACCACACACCTTAGGCAAGTTGATGGACGCGATTGGAAAAGGGAAGCAGACTTACTAAGGCAGAATCCATTGCGCAACTTTCCTTCTAACAGTTTCCGATGA 1149 42.65 MEDATIQELDPETEFLFSKRKTENDWELFKENVRPLKRGRNISILNNALKSHTDNHLKKSLLDNRRKLIEAIDDYKGDDPLQPWLECIKWVQEAYPAGGDFSGLVLIYEQCVRNFWHSDRYKEDLRYLKVWLEYAENCFDAEVIFNFLHANEIGTTHSAYYIAYALHLESKSKSKAANDMFNLGISRNAHPIDKLKDAYRMFLLRTMQRPKAADESVEKCLPVRSFGTVLPNPGMLTMGNVDRSRKNMKPERSYLAPLDVYDDSKVAVTSHHEPDVSKAHLNSWTVLGSRRERNKENNAPPSKWTSHKIPQRIGSRIGGSNANAPIEVFVDEECEEAHKLEHEESRKSSTTHLRQVDGRDWKREADLLRQNPLRNFPSNSFR 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13007954 13011090 - CmaCh01G020480.1 Cma01g02048 287741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02048 382 Gene3D - 20 206 - -
Cma01g02048 382 ProSiteProfiles BUB1 N-terminal domain profile. 68 225 IPR013212 -
Cma01g02048 382 Pfam Mad3/BUB1 homology region 1 64 185 IPR013212 -
Cma01g02048 382 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 24 381 IPR015661 GO:0007094
Cma01g02048 382 MobiDBLite consensus disorder prediction 289 321 - -
Cma01g02048 382 MobiDBLite consensus disorder prediction 340 362 - -
Cma01g02048 382 SMART mad3_bub1_i 61 185 IPR013212 -
Cma01g02048 382 PANTHER MITOTIC SPINDLE CHECKPOINT PROTEIN BUBR1 24 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02048 K02178 BUB1; checkpoint serine/threonine-protein kinase [EC:2.7.11.1] - csv:101209215 659.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02048 Cma-Chr1:13007954 Cma16g00724 Cma-Chr16:3803115 4.10E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g30 Blo01g01655 . . . Bpe02g00288 . . . . . Cma01g02048 . Car01g01613 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02432 Csa04g02746 . . . . . . . . . . . Cmo01g02104 . . . . . . . . . . . . . . Cla11g01860 Cam11g1927 Cec11g1954 Cco11g1966 Clacu11g2092 Cmu11g1895 Cre11g2303 . . Chy07g00434 Cme07g00016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013140 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 1 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02048 Cma_Chr01 FPKM 7.39885 7.677191 0.875653 0.882779 26.128334 25.782648 27.748268 1.359583 1.670792 1.375709