Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02052 ATGATGGCTGACATGGATGTGCACGCCGACGTCTCTGAGGTTAACGAGAAGTGTGCCTTGGATATGAGTACCTATGAGAATTTGCCTAACGCTTGCAATGCATCACCCCTTGACTCTGCTGCTTCCATTCCTAAGGATAATACTGATGCTTCTTACGTTTTCGTCAACTCCACCGATGCTGCTACTTCCGATGATCATGTTGTGTCGGATCTCAATGGGCAACCAGAGTGTTCTCACAATGTCGATACGGAAATTAAGGTTCATAATGGGGAATTCTGTACGGACGATGGTAGGAAACCCGATTCATTTTTCGTTTCCAATGCATCTGAGGATTCACCGTTTAAATTTTCTGAGCATTTGAAAGTGAGTGACGCAATTCAGGATGAGACTAGAGTGGTAGATGTTCTTCAATCTTCTGACGCCAAGGTGGATGAGGCGGAACCTGGACTGGATTCCTCCCAAAAAGTGGAAGAAACTCGAATCCTGGAGAACCAGGCTGTGAACGAATTGTTTGATGCAGAAAAGAATTCGGGTGAAATCTATGGGGTAGATGCTCCTCAAGAAGATGAAAACGTTCAGATTCAGGAGGAAAATCAAATAATTTCTACCACTGAGTCTTCAAACACGGATGCAAATCTTGGTGGACAAATCTTGGTGGTGTCTTCTCAAATGGTGGAAGATATTCAAATTCACGAGGATAATGGAGTAATGGGAATCATGAAGTCTTCTAATACCAAGGCAAATCATGGGATAGACATTGAGGCGGAGTCTTCGCAAAACGCAGAGGGCATCCAATTTCGCAAGGAATATGGAATTGTTGCAATCAAGTTTTCTGATCCTGAGTCAAACACTGGGGAAGAAATTGAGGTGGAGTCTTCTCGAAAGGCAGACGAGGTCCAGAATCATGAGGAAAATGGCAGAGTGAAAGCCTTTAATTTGACTGATACTGCGGCAACTCTTAGGGGAAAAATTAAGTTGGAGTCTTCTAAGAAGGCAGACGATATTCAGAATGGTGAGGAAAATGTCAGAATGAAAGCCTTCGATTTGTCTTGTACCGTGGCTAATCCTAGGGGGAAAATTGAGGTGGAGTCTTCTCAAAAGGGAGACGACATTCTGAATGATGAGGAAAATGGCAGAGTGAAAGCCTTCAATTTGTCTGATACTGAGGTGGACATTCAGAATCATAAGGAAAATGGCATAATGAAAGCCCCCAAGCTGTCTAATACCGAGGCAAATCCTAGGTCAGAAATTGAAGTGGAGTCTCCTGGGGAGGGGGAAGATATTAAGCTTAACGGGCAAAATGAAATAGTGGACGCCGTCAAATCTTCTGCTACCGTGGATAAGCGTGGGCAAGGTGAAGTAGTTCCCGAGGATAATGAAACAGTGGCTATTAATGAATTGTCTGATACCATTGAAAACCGCAGTGAAGAAACTGAGTTGGACTCTTTCGAGAGAGAAGAAGGCATTCGAGAATCACAAGATGCAAATGTGGAGGCTGCCGACTGCCATTCTGGCAAAGAGAAGGTTGATGAGATGGTAAATAAAGCTGCGATAAGCGACCCAGTAGGAGGATTAGGAGAATCTCAAATTATAAACGGTGAGGATTCTCTTTTAGAGCCATCTGAAGAAAACAAAGTGGACATGGAGCAGCATTTGGCAGCAGCTCCTAGTCCATTGGTCAATTCAGAAGATCTAAATGGTTCTATCTCCACTAGCACTGCAACGAGTATGGATCAAGATGACCCTTCTAAGACTATTGATGACAAAGACACTGGAGCTAACACGAGCAGCTTCCATGACCATACTGAAACTTTATCTAGCTCTGTAGATCCTGATATTGATTCTGTTGAAACTCATAAATTAACTCATACAATGCTTATTAATGATCCAAAAGTAGAGTTAAATGAGATTACCGTGAATGAACAAGAGGTGAATCATGTGTTAGAACTAGAAGAAACTTCAGAAACGGCCTCCCATCCTAAAGTGGACGAATGTGACAGGGTTGAAGTTTTGGAAGGTACAGTCTCTGGAGATGAGATGTCCATTGCGCTTGATGAATCTAGAACTTCTTATGGTGATGATTCTGTTGCGGGAAGTCAATTAATCCCTGTGGAAGTTGAACCTGCACAAAGCGTTGAAACAGCAGTCTCTTCTGTTGTGATAGGAAATACTTCAGTTGAAATAAGGAAAATGTCCTGTACACACAGTCTTGATGATCCAGTACTGAGACCTGATCTTGAAGCCGAGGATTGTACTATGTCTGAAAATGTGGCTTCTGCTGATGATTATGTCCAACTGGATAATGAAGTCCGTGAAAATCATGAGATTAGTCTTCTTCTTGGTGACAATAATTTTGAAACCAAGTCCGAGAGTGGTGACATCGAAGAAGAAAACCAATCAACTTTCCCTTGTAATGATATGAGATCAGAATCTAACGATTTTATTTCAATTGAATGTGAAGAGAGAGGTTCTACTGTTCCTGAAGTTCCTAATGGTGGCAATAAATCTACTGCGATCCAACAAAGTTCTGCTGTTGAAACAGATTCAGAATTCCGTGATAATGAACGTAGCTTAAGTCCAACTGCTAATGAGAAATCAGGAGAGAATATCGAGATTGCATCTTCCGTAGTAGGTGGTGGCAGAGATATAACTAGCGATGATTGCACATCAGAAACTGAAGTCAAGGGTTCTGCAGTAAACGATGAAGTGGATCTGAACCCAATGTCTGATATTGCCTCTCAAACTGACAGTAAACCGACAAAAGAAGAAACTGAGGTCGTTCATAGTTGCCAGAATGAACCTTCCCCTATTTCCCCAGAAGGTTCTATTGAAGCTTTGGCAGGGAAGAATGTAGGTACTGAAGCAGGAACAAAGCCACTTAACTTTTTGGTTAGGGTACCTAAATTTGGTGATGTAAATATAAGAGAGCAGATTAAGAGTGCTCAAATGGAAGTTGATCAGACGACCAAGGATAGAGATGCTATTCGAGTTCAAATACAGATAGTGAGGGCTGCATGGAAAGTGTTAAGTGATAATCTTGAAGCTGCAGTGTCAGAAGGAAGAGCTGCAAGAGACTTGCTGAAGTCAAAACGACAGGAGATTGACTCTGTTCAATCAGTCATAACAAAAGTAAAGAATGCAATGTCCATTGGGGACATTGATGGCAGGGTACGCAGCATTGAACACAGTATAGAGCATGAAACACTGCCACTGAAAGAGGAAAAACAATTGATTCGTGAAATCAAGCAATTGAAGCAGCTACGGGAACAGCTTTCATCTACTACGGGTAAGCAGAATGAGCTTCAACAGGCATTGGACCAGAAAGACCAGTTTGAAGAGCGCCTAAGGCTATTAAGAAAGGAGATGGATTTACTGAGAGGCAATGTTCTGAAAGCTGAATCAGTTATAAAGGCTGCCAAGAAGATATGTAATGATGAAAGCTTAAAGCTGGATGAATTGCAATCCAAGTTTAAAGCAGCAGATAAGATTCGCCAAGAAGCATATGCCAATTTACAGAGTTTGAGGAAGCAATTATACGATAAGAACAAATACTACTGGAAGTATCGGGATGACGTGAAAGAAGCCAATGAAATCGCATCGAGTGGAGATGTAGAGAGACTGCAACGTTTTTCTGTTAATCAGGTGGAGTGCATGATGGAACTGTGGAACACAAATGCTGAGTTCAGGGAAGAATATATTAAGACCAACATGAGAAGTACCCTGAGGCGACTAAAAACGTTGGATGGCCGCTCCCTTGGCCCCAATGAAGAGCCACATGCACTAAACCATATTGTAAAGGAGAGACCAGCGAGGGACAATTCTCTTTCAACAGTTTCAAAAACGCTGGAACCAGAAAAACTGATACCCGCTGAGAATATGAGAGATAATGATAAGCCAGTGATCGAAGTAGTCAAAACAAAGAATCAACCGACAAAAAACAAGAAGCCCACGACAGTTGTGGCTTTAGTGAATGGCCTTGGGAATATTTCTTGCGAGAATGACGTAGAAGAGCCACCACGACCCGTGGAGATTAAGCGAACAAGAGAGGAAGAGGAGTTGGCGGCGAAAGCAGAAGAGTTGAGAAAGAAAGAGGAAGCAATCAAGTTGAAGGAGCAACATAAGTTGGAAGAGAAGACCAAAGCCAAAGAGGCATTGGAGAGGAAAAGTAGAAATGCTGAGAAAGCCCACGCTAGGGCGGCAACTAAAGCAAGAAAAGAGGCGGAAGAGAGAGAGAAGCTAAGGGAGAAGAGAGCAAAAAAGAAGGCAAGGAAGATGGCAGCAGCTGAGACGGAAGCTGGAAATGGTTTGGAAGAAAGGGAATCTGGTATAATCACGGAGAGCACCCCGAAGGAGGTGTCTGAAAACACAGGTAAACAGGGGACGGCTGCGAAGAGGCCACAAAAAGCGTCGCAGTCGCAGTACACCAAGCACAGCAAGACAAAGTCAACAATTCCTCCACATCTTCGAAATCGGAGTAAGAGGGGGATGCAGCCATGGATGTGGGTTCTTTTGGCCACCCTGATTGTTTTCGTGGTGTTCTTCGTGGGGGCAACAACGGCTTCTATACTAGGTCTTGGTTTCTAA 4584 43.02 MMADMDVHADVSEVNEKCALDMSTYENLPNACNASPLDSAASIPKDNTDASYVFVNSTDAATSDDHVVSDLNGQPECSHNVDTEIKVHNGEFCTDDGRKPDSFFVSNASEDSPFKFSEHLKVSDAIQDETRVVDVLQSSDAKVDEAEPGLDSSQKVEETRILENQAVNELFDAEKNSGEIYGVDAPQEDENVQIQEENQIISTTESSNTDANLGGQILVVSSQMVEDIQIHEDNGVMGIMKSSNTKANHGIDIEAESSQNAEGIQFRKEYGIVAIKFSDPESNTGEEIEVESSRKADEVQNHEENGRVKAFNLTDTAATLRGKIKLESSKKADDIQNGEENVRMKAFDLSCTVANPRGKIEVESSQKGDDILNDEENGRVKAFNLSDTEVDIQNHKENGIMKAPKLSNTEANPRSEIEVESPGEGEDIKLNGQNEIVDAVKSSATVDKRGQGEVVPEDNETVAINELSDTIENRSEETELDSFEREEGIRESQDANVEAADCHSGKEKVDEMVNKAAISDPVGGLGESQIINGEDSLLEPSEENKVDMEQHLAAAPSPLVNSEDLNGSISTSTATSMDQDDPSKTIDDKDTGANTSSFHDHTETLSSSVDPDIDSVETHKLTHTMLINDPKVELNEITVNEQEVNHVLELEETSETASHPKVDECDRVEVLEGTVSGDEMSIALDESRTSYGDDSVAGSQLIPVEVEPAQSVETAVSSVVIGNTSVEIRKMSCTHSLDDPVLRPDLEAEDCTMSENVASADDYVQLDNEVRENHEISLLLGDNNFETKSESGDIEEENQSTFPCNDMRSESNDFISIECEERGSTVPEVPNGGNKSTAIQQSSAVETDSEFRDNERSLSPTANEKSGENIEIASSVVGGGRDITSDDCTSETEVKGSAVNDEVDLNPMSDIASQTDSKPTKEETEVVHSCQNEPSPISPEGSIEALAGKNVGTEAGTKPLNFLVRVPKFGDVNIREQIKSAQMEVDQTTKDRDAIRVQIQIVRAAWKVLSDNLEAAVSEGRAARDLLKSKRQEIDSVQSVITKVKNAMSIGDIDGRVRSIEHSIEHETLPLKEEKQLIREIKQLKQLREQLSSTTGKQNELQQALDQKDQFEERLRLLRKEMDLLRGNVLKAESVIKAAKKICNDESLKLDELQSKFKAADKIRQEAYANLQSLRKQLYDKNKYYWKYRDDVKEANEIASSGDVERLQRFSVNQVECMMELWNTNAEFREEYIKTNMRSTLRRLKTLDGRSLGPNEEPHALNHIVKERPARDNSLSTVSKTLEPEKLIPAENMRDNDKPVIEVVKTKNQPTKNKKPTTVVALVNGLGNISCENDVEEPPRPVEIKRTREEEELAAKAEELRKKEEAIKLKEQHKLEEKTKAKEALERKSRNAEKAHARAATKARKEAEEREKLREKRAKKKARKMAAAETEAGNGLEERESGIITESTPKEVSENTGKQGTAAKRPQKASQSQYTKHSKTKSTIPPHLRNRSKRGMQPWMWVLLATLIVFVVFFVGATTASILGLGF 1527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13030257 13036061 + CmaCh01G020520.1 Cma01g02052 287745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02052 1527 MobiDBLite consensus disorder prediction 788 809 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 581 596 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 597 612 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 1446 1481 - -
Cma01g02052 1527 Coils Coil 1074 1128 - -
Cma01g02052 1527 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 415 1519 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 822 943 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 561 580 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 555 612 - -
Cma01g02052 1527 Coils Coil 1346 1430 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 406 428 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 1371 1415 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 829 847 - -
Cma01g02052 1527 MobiDBLite consensus disorder prediction 1371 1491 - -
Cma01g02052 1527 Coils Coil 1136 1156 - -
Cma01g02052 1527 PANTHER CALPONIN-LIKE DOMAIN PROTEIN 415 1519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02052 - - - cmos:111446165 2685.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g02052 Cma09g00011 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01209 Cma-Chr1:8761620 Cma01g02052 Cma-Chr1:13030257 1.90E-34 dispersed
Cma01g02052 Cma-Chr1:13030257 Cma09g00862 Cma-Chr9:4227156 5.67E-36 dispersed
Cma01g02052 Cma-Chr1:13030257 Cma09g00011 Cma-Chr9:73155 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g25 Blo01g01657 . . . Bpe02g00286 . . . . . Cma01g02052 Cma09g00011 Car01g01616 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02435 Csa04g02749 . . . . . . . . . . . Cmo01g02107 Cmo09g00011 . . . . . Cpe02g00007 . . . . . . . . . . . . . . . . Chy07g00437 Cme07g00014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011484 0 2 2 0 2 0 2 0 0 1 0 1 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02052 Cma_Chr01 FPKM 12.933952 14.099882 10.929562 11.988257 12.38436 11.771565 11.870879 9.934277 8.929429 8.953727