Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g02054 ATGAGGAAAGACGGTCCGGCTACCTCCATCGGCGACGCCCAAGTCGGCAAACTCTTCACCTGCTTCGAGACCAAGCCTCTGGTCGCCACATGTCTCGCCCTCACTCTTGTCATGTTCCTCTGGAATCTTCCACCTTACTACCAGAATCTCCTCTTCACCACCGCCCGCTCCTGCTCCGCCCCCACCAACACCGCCGACGCCGCCCTCGCCAATCTCACCATTCCTCCCAATACCTCTCTCCCCTTTACTGCATCCGCCGCTGCCAAAAAGTACTCCACCACCCTCCCAACCGATCCCAACAACCGAATTTTCCAGCCATTTGGTAATGCTGCGGCTCTATTCGTTTTAATGGGAGCCTATAGAGGCGGACCACGCACTTTTGCCATCGTCGGCCTTGCTTCCAAACCCATTCACGTCTACGGCCATCCTTGGTACAAATGCGAGTGGATCTTCAACAATGGATCTTCCATTAGGGCCAAGGCCTACAAGATTCTTCCCGATTGGGGCTATGGCCGTGTCTACACCGTCGTCGTCGTCAATTGCACTTTTCCCCTCAATCCCAATCACGACAATTCGGGTGGAAAGCTTACGGTTAATGCCTACTACGGTCAGTCTCAGAAAAAGTACGAAAAGTTCACTGCTCTTGAGGAATTGCCAGGCTCTTACAACGCATCCAAGTTCCGTCCTCCTTATGACTACGAATATTTGTACTGCGGTTCGTCTCTCTACGGGAACCTCAGTGCCGCCAGGATCAGAGAATGGATGGCATACCATGCCTGGTTCTTCGGGTCTAAATCCCATTTTGTGTTTCACGACGCCGGCGGGGTGTCCCCAGAGGTCAGGGCTGTCCTCGAGCCGTGGGTGCGAGCTGGAAGGGTCACAATTCAGGACATCAGAGCACAGTCAGAGTACGATGGGTATTACTATAATCAGTTTCTGGTAGTGAACGACTGCCTCCACCGGTACCGACACGCGGCAAACTGGACATTTTATTTCGATGTGGACGAGTACATATATTTGCCCGAGGGGAGTAGCTTGGAGTCCGTGTTGGAAGAGTTTTCCGCATTTACTCAATTTACAATCGAGCAGAACCCAATGTCCAGTATGCTGTGTTTGAACGATTCCGCTCAAAATTACTCCAGGAAATGGGGGTTTGAAAAGCTGCTGTTTAAAGACATAAAGTCTGGAATCTGGAGAGACCGGAAGTACGCGATACAAGCCAAGAACGCGTATGCTACGGGGGTACACATGTCGGAAAATGTGATTGGAAATACAACGCACAAAACAGAGTCCAAGATTAGATACTATCATTACCACAACTCCATCATGGTGAGAGGGGAACTGTGCAGGGAATTCCTCCCCAACTCCGCCATTCATAACGTCACAATCTTCAACCAAACCCCTTTTGTGTACGACGACAAGATGAAGAAGCTTGCTGACACCATTAAGGAGTTCGAGCGCCACGCCATCGACAGACATCAGCAACAGCTAGGCTTGATACTGATGGGTGCCTGTTTATCCGACTGCCTCAATCATCCCAAACCCTCTTCTGTTTCTCCACCTCCTCCCACCGCCAAAGTGATCTCTTTGCAAGGCCATCTCCGCGAATACCCTGTTCCCATCTCCGTCTCCCGCGTTCTCCAGACCGAAAACTCCTCTTCTTCACTTTCCGACTCCTTTCTTTGCAACTCCGACCGCTTATACTACGATGACTTCATCCCCCCTTTGCCACTCGATGAACAGCTTCTCCCTAATCAGATCTATTTCCTCCTTCCTTCCTCCAACCTCCACCACCGATTGAGCGCCTCCCAAATGGCTGCCTTGGCTGTCAAAGCCAGCCTCGCCCTCCAAAATGCCTCCCCCAACGATCGCCGTAAAAAGGGTCGTGTTTCTCCCCTCCTCAACCTCTCGGATTCCGACCACATCATCTCCAAGGAGCCCTCCAAAAAGAACGCCGCCGCGGATACCTCTGCCTCACCCTCCGTTAGAAAATTGCAGAGATTGACGTCCAGAAGAGCAAAAATGGCTGTTCGTTCCTTTAAACTCAAATTGAGCACCATCTATGAAGGCGCCGTTCTGTAG 2082 51.49 MRKDGPATSIGDAQVGKLFTCFETKPLVATCLALTLVMFLWNLPPYYQNLLFTTARSCSAPTNTADAALANLTIPPNTSLPFTASAAAKKYSTTLPTDPNNRIFQPFGNAAALFVLMGAYRGGPRTFAIVGLASKPIHVYGHPWYKCEWIFNNGSSIRAKAYKILPDWGYGRVYTVVVVNCTFPLNPNHDNSGGKLTVNAYYGQSQKKYEKFTALEELPGSYNASKFRPPYDYEYLYCGSSLYGNLSAARIREWMAYHAWFFGSKSHFVFHDAGGVSPEVRAVLEPWVRAGRVTIQDIRAQSEYDGYYYNQFLVVNDCLHRYRHAANWTFYFDVDEYIYLPEGSSLESVLEEFSAFTQFTIEQNPMSSMLCLNDSAQNYSRKWGFEKLLFKDIKSGIWRDRKYAIQAKNAYATGVHMSENVIGNTTHKTESKIRYYHYHNSIMVRGELCREFLPNSAIHNVTIFNQTPFVYDDKMKKLADTIKEFERHAIDRHQQQLGLILMGACLSDCLNHPKPSSVSPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSLSDSFLCNSDRLYYDDFIPPLPLDEQLLPNQIYFLLPSSNLHHRLSASQMAALAVKASLALQNASPNDRRKKGRVSPLLNLSDSDHIISKEPSKKNAAADTSASPSVRKLQRLTSRRAKMAVRSFKLKLSTIYEGAVL 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13045384 13049037 + CmaCh01G020540.1 Cma01g02054 287747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g02054 693 Pfam Glycosyltransferase family 92 234 449 IPR008166 -
Cma01g02054 693 Pfam PADRE domain 502 689 IPR025322 -
Cma01g02054 693 PANTHER GALACTAN BETA-1,4-GALACTOSYLTRANSFERASE GALS1 14 492 - -
Cma01g02054 693 PANTHER UNCHARACTERIZED 14 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g02054 K23869 GALS; galactan beta-1,4-galactosyltransferase [EC:2.4.1.-] - cpap:110816714 789.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02054 Cma-Chr1:13045384 Cma07g00004 Cma-Chr7:39056 6.39E-147 dispersed
Cma01g02054 Cma-Chr1:13045384 Cma03g01508 Cma-Chr3:9387033 2.55E-148 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g20 . Blo12g00837 . Bda03g00338 . Bpe04g00298 Bma04g00307 Bma01g02430 . . Cma01g02054 . Car01g01618 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02439 Csa04g02753 . . . . . . . . . . . Cmo01g02110 . . . . . . Cpe02g00004 . . . . . . . Cla11g01865 Cam11g1935 Cec11g1960 Cco11g1974 Clacu11g2100 Cmu11g1902 Cre11g2310 . . Chy07g00441 Cme07g00009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003060 3 0 3 3 2 1 3 1 1 1 1 1 2 1 1 2 1 3 3 1 1 2 1 2 4 1 2 1 2 2 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g02054 Cma_Chr01 FPKM 14.637177 14.829535 12.542826 12.035261 25.672865 29.680019 23.481918 0.83478 0.899566 0.983873