Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00024 ATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCACCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGAGTTGCCGGAGCACCAGCGGAGCGACGCGGTGAGCTCGATGGTGTACGAAGCAAACGCAAGGGTCCGAGATCCAGTGTACGGCTGCGTCGGAGCCATATCGTCGCTGCAACAGCAAATCGACCTGTTACAAACCGAGCTAGCGATTGCGCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCGTCGAACCCGACAGCCGGACACTCGCCGGAAACTGCGTCGCCGTCCGGCAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAG 501 55.29 MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 124732 126180 + CmaCh02G000240.1 Cma02g00024 287775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00024 166 MobiDBLite consensus disorder prediction 120 150 - -
Cma02g00024 166 Coils Coil 92 112 - -
Cma02g00024 166 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cma02g00024 166 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cma02g00024 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 156 - -
Cma02g00024 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00024 Cma-Chr2:124732 Cma13g00447 Cma-Chr13:4990036 1.04E-66 dispersed
Cma02g00189 Cma-Chr2:863332 Cma02g00024 Cma-Chr2:124732 3.29E-24 dispersed
Cma04g00272 Cma-Chr4:1334411 Cma02g00024 Cma-Chr2:124732 9.58E-50 dispersed
Cma15g00433 Cma-Chr15:1939997 Cma02g00024 Cma-Chr2:124732 6.65E-50 dispersed
Cma18g01019 Cma-Chr18:8518054 Cma02g00024 Cma-Chr2:124732 1.57E-10 dispersed
Cma20g00329 Cma-Chr20:1612823 Cma02g00024 Cma-Chr2:124732 2.35E-48 dispersed
Cma20g00467 Cma-Chr20:2255365 Cma02g00024 Cma-Chr2:124732 3.43E-51 dispersed
Cma02g00024 Cma-Chr2:124732 Cma04g01102 Cma-Chr4:5668634 1.57E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34397 PF03195 LOB 6.90E-44 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00024 - - csv:101220394 292.352