Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00024 | ATGAAGGAGAGTGGACGGAAACAAGGCGCTGTTGCACCATGCGCCGCCTGTAAGCTTCTTCGTCGGAGATGTGCTCAAGACTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAGTTCGCCAGCGTCCATAAAGTCTTCGGCGCTAGTAATGTCAACAAGATGTTACAGGAGTTGCCGGAGCACCAGCGGAGCGACGCGGTGAGCTCGATGGTGTACGAAGCAAACGCAAGGGTCCGAGATCCAGTGTACGGCTGCGTCGGAGCCATATCGTCGCTGCAACAGCAAATCGACCTGTTACAAACCGAGCTAGCGATTGCGCAAGCGGAAGTAGTACACATGCGAATGCGTCAATTCACATCGTCATCGTCGAACCCGACAGCCGGACACTCGCCGGAAACTGCGTCGCCGTCCGGCAAGATCAACATTCCGCCGCAAAACAAGTCCTATTTTTCCATGGACAACATGGGGGAGTCGTTGTGGTCATCCTGCTAG | 501 | 55.29 | MKESGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMRQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSMDNMGESLWSSC | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 124732 | 126180 | + | CmaCh02G000240.1 | Cma02g00024 | 287775 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00024 | 166 | MobiDBLite | consensus disorder prediction | 120 | 150 | - | - | |
Cma02g00024 | 166 | Coils | Coil | 92 | 112 | - | - | |
Cma02g00024 | 166 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
Cma02g00024 | 166 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - | |
Cma02g00024 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 156 | - | - | |
Cma02g00024 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 1 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00024 | Cma-Chr2:124732 | Cma13g00447 | Cma-Chr13:4990036 | 1.04E-66 | dispersed | |
Cma02g00189 | Cma-Chr2:863332 | Cma02g00024 | Cma-Chr2:124732 | 3.29E-24 | dispersed | |
Cma04g00272 | Cma-Chr4:1334411 | Cma02g00024 | Cma-Chr2:124732 | 9.58E-50 | dispersed | |
Cma15g00433 | Cma-Chr15:1939997 | Cma02g00024 | Cma-Chr2:124732 | 6.65E-50 | dispersed | |
Cma18g01019 | Cma-Chr18:8518054 | Cma02g00024 | Cma-Chr2:124732 | 1.57E-10 | dispersed | |
Cma20g00329 | Cma-Chr20:1612823 | Cma02g00024 | Cma-Chr2:124732 | 2.35E-48 | dispersed | |
Cma20g00467 | Cma-Chr20:2255365 | Cma02g00024 | Cma-Chr2:124732 | 3.43E-51 | dispersed | |
Cma02g00024 | Cma-Chr2:124732 | Cma04g01102 | Cma-Chr4:5668634 | 1.57E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34397 | PF03195 | LOB | 6.90E-44 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00024 | - | - | csv:101220394 | 292.352 |