Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00038 ATGGCGTCTGGGAATTCATTGAATGATCATTTATCCAAGAGGACTTCATTTTGGGGGTTGTCGTTGTGGGTTTTGATCTGTATTTGTATTGGTGCATTCATAGTTTTGATTCTTGGCTTATTATCTATGTGGATCTTGTTTAGAAAAAAATCTAAACGATCCATGGATAAATTCCCTATTTCCCAGATACCTAATTTTTCAAAAGATATCAGGATAGACCAGGTTGGGGCTCAAACTCAAACTCAAACTCAAACTCCCAATGACCACCCCGAAAATCGACTTCTTTCGGTTGATATCAAAAGGAATGATGAAAACTCTGAAGTTATGGCTGTGACAAACTCAACTGAGCCTGATAATAACAGCCAAAGCAGTTTGAATTATCGACACGAAAAAGCAGGCAATTCACAATCAGGGGAAGAAGGAAGCTCTGGAAAAGCTAGATCGTATGGAGGAATTGTGCCACCGTCGCCTCTTGTTGGCTTGCCTGAAGTTTCACATCTTGGATGGGGTCACTGGTTCACTCTCAGGGATCTACAGCTTGCAACGAATCGTTTTTCGTCCGAAAATATTCTTGGAGAGGGAGGATATGGGGTTGTATATAAAGGAAGACTCATCAATGACACTGTAGTTGCAGTGAAAAAGCTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTCGAGTCGAAGTGGAGGCTATTGGTCATGTTCGACATAAGAATCTCGTTCGATTGCTCGGTTATTGCATAGAAGGCGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGCAATCTAGAACAGTGGCTACATGGAGCCATGAGCCAACACGGCACGCTTACGTGGGAGGCTCGTATGAAGGTGCTTCTTGGCACTGCGAAGGCGCTTGCATATTTACATGAAGCAATCGAGCCAAAAGTTGTTCATAGAGATATAAAATCGAGCAACATTTTGATCGATGATGAGTTCAATGCCAAAGTTTCCGATTTCGGATTGGCCAAACTCTTGGACTCTCGGGAGAGTCATATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCACCTGAATATGCAAATACCGGTTTGTTGAATGAAAAGAGTGACATTTATAGCTTTGGTGTTCTCCTACTAGAAGCAATTACAGGGAGAGACCCTGTGGATTATGCTCGTCCTTCTAACGAGGTTAATCTTGTTGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAATCTCGACGTAAAGCCTACTACTCGAGCATTGAAACGTGCCCTTCTCGTTGCACTTCGGTGTATCGATCCCGAATCAATCAAGAGACCCAAGATGAGTCAAGTTGTAAGGATGCTCGAAGCCGATGAATTTCCACTTCACGAGGATAGAAGAAACCGAAAAAGCCGATCGATAAGCTTGGAGATCGAGCCGTTGAACGAAATATCAGGTTGTGATCAGATGGGTGGGGCATCAGAGAGCCAAAAATCAGAGACAAGCCATGGAGGATAG 1521 43.2 MASGNSLNDHLSKRTSFWGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSMDKFPISQIPNFSKDIRIDQVGAQTQTQTQTPNDHPENRLLSVDIKRNDENSEVMAVTNSTEPDNNSQSSLNYRHEKAGNSQSGEEGSSGKARSYGGIVPPSPLVGLPEVSHLGWGHWFTLRDLQLATNRFSSENILGEGGYGVVYKGRLINDTVVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMSQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSRESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLDVKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEIEPLNEISGCDQMGGASESQKSETSHGG 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 195273 198633 + CmaCh02G000380.1 Cma02g00038 287789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00038 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Cma02g00038 506 Gene3D Transferase(Phosphotransferase) domain 1 261 474 - -
Cma02g00038 506 SMART serkin_6 185 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00038 506 PANTHER OS01G0323000 PROTEIN 3 500 - -
Cma02g00038 506 Pfam Protein kinase domain 186 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00038 506 MobiDBLite consensus disorder prediction 110 149 - -
Cma02g00038 506 PANTHER OS10G0497600 PROTEIN 3 500 - -
Cma02g00038 506 MobiDBLite consensus disorder prediction 467 506 - -
Cma02g00038 506 ProSiteProfiles Protein kinase domain profile. 185 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00038 506 MobiDBLite consensus disorder prediction 490 506 - -
Cma02g00038 506 ProSitePatterns Protein kinases ATP-binding region signature. 191 214 IPR017441 GO:0005524
Cma02g00038 506 MobiDBLite consensus disorder prediction 110 143 - -
Cma02g00038 506 SUPERFAMILY Protein kinase-like (PK-like) 169 460 IPR011009 -
Cma02g00038 506 Gene3D Phosphorylase Kinase; domain 1 166 260 - -
Cma02g00038 506 CDD STKc_IRAK 191 457 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00038 Cma19g01083 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00038 Cma-Chr2:195273 Cma20g00260 Cma-Chr20:1270014 0 dispersed
Cma11g01962 Cma-Chr11:12853356 Cma02g00038 Cma-Chr2:195273 0 wgd
Cma19g01083 Cma-Chr19:9013783 Cma02g00038 Cma-Chr2:195273 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68310 PF00069 Pkinase 2.70E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00038 - - csv:101214087 878.626