Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00038 | ATGGCGTCTGGGAATTCATTGAATGATCATTTATCCAAGAGGACTTCATTTTGGGGGTTGTCGTTGTGGGTTTTGATCTGTATTTGTATTGGTGCATTCATAGTTTTGATTCTTGGCTTATTATCTATGTGGATCTTGTTTAGAAAAAAATCTAAACGATCCATGGATAAATTCCCTATTTCCCAGATACCTAATTTTTCAAAAGATATCAGGATAGACCAGGTTGGGGCTCAAACTCAAACTCAAACTCAAACTCCCAATGACCACCCCGAAAATCGACTTCTTTCGGTTGATATCAAAAGGAATGATGAAAACTCTGAAGTTATGGCTGTGACAAACTCAACTGAGCCTGATAATAACAGCCAAAGCAGTTTGAATTATCGACACGAAAAAGCAGGCAATTCACAATCAGGGGAAGAAGGAAGCTCTGGAAAAGCTAGATCGTATGGAGGAATTGTGCCACCGTCGCCTCTTGTTGGCTTGCCTGAAGTTTCACATCTTGGATGGGGTCACTGGTTCACTCTCAGGGATCTACAGCTTGCAACGAATCGTTTTTCGTCCGAAAATATTCTTGGAGAGGGAGGATATGGGGTTGTATATAAAGGAAGACTCATCAATGACACTGTAGTTGCAGTGAAAAAGCTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTCGAGTCGAAGTGGAGGCTATTGGTCATGTTCGACATAAGAATCTCGTTCGATTGCTCGGTTATTGCATAGAAGGCGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGCAATCTAGAACAGTGGCTACATGGAGCCATGAGCCAACACGGCACGCTTACGTGGGAGGCTCGTATGAAGGTGCTTCTTGGCACTGCGAAGGCGCTTGCATATTTACATGAAGCAATCGAGCCAAAAGTTGTTCATAGAGATATAAAATCGAGCAACATTTTGATCGATGATGAGTTCAATGCCAAAGTTTCCGATTTCGGATTGGCCAAACTCTTGGACTCTCGGGAGAGTCATATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCACCTGAATATGCAAATACCGGTTTGTTGAATGAAAAGAGTGACATTTATAGCTTTGGTGTTCTCCTACTAGAAGCAATTACAGGGAGAGACCCTGTGGATTATGCTCGTCCTTCTAACGAGGTTAATCTTGTTGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAATCTCGACGTAAAGCCTACTACTCGAGCATTGAAACGTGCCCTTCTCGTTGCACTTCGGTGTATCGATCCCGAATCAATCAAGAGACCCAAGATGAGTCAAGTTGTAAGGATGCTCGAAGCCGATGAATTTCCACTTCACGAGGATAGAAGAAACCGAAAAAGCCGATCGATAAGCTTGGAGATCGAGCCGTTGAACGAAATATCAGGTTGTGATCAGATGGGTGGGGCATCAGAGAGCCAAAAATCAGAGACAAGCCATGGAGGATAG | 1521 | 43.2 | MASGNSLNDHLSKRTSFWGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSMDKFPISQIPNFSKDIRIDQVGAQTQTQTQTPNDHPENRLLSVDIKRNDENSEVMAVTNSTEPDNNSQSSLNYRHEKAGNSQSGEEGSSGKARSYGGIVPPSPLVGLPEVSHLGWGHWFTLRDLQLATNRFSSENILGEGGYGVVYKGRLINDTVVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMSQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSRESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLDVKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEIEPLNEISGCDQMGGASESQKSETSHGG | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 195273 | 198633 | + | CmaCh02G000380.1 | Cma02g00038 | 287789 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00038 | 506 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 307 | 319 | IPR008271 | GO:0004672|GO:0006468 | |
Cma02g00038 | 506 | Gene3D | Transferase(Phosphotransferase) domain 1 | 261 | 474 | - | - | |
Cma02g00038 | 506 | SMART | serkin_6 | 185 | 439 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g00038 | 506 | PANTHER | OS01G0323000 PROTEIN | 3 | 500 | - | - | |
Cma02g00038 | 506 | Pfam | Protein kinase domain | 186 | 454 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g00038 | 506 | MobiDBLite | consensus disorder prediction | 110 | 149 | - | - | |
Cma02g00038 | 506 | PANTHER | OS10G0497600 PROTEIN | 3 | 500 | - | - | |
Cma02g00038 | 506 | MobiDBLite | consensus disorder prediction | 467 | 506 | - | - | |
Cma02g00038 | 506 | ProSiteProfiles | Protein kinase domain profile. | 185 | 449 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g00038 | 506 | MobiDBLite | consensus disorder prediction | 490 | 506 | - | - | |
Cma02g00038 | 506 | ProSitePatterns | Protein kinases ATP-binding region signature. | 191 | 214 | IPR017441 | GO:0005524 | |
Cma02g00038 | 506 | MobiDBLite | consensus disorder prediction | 110 | 143 | - | - | |
Cma02g00038 | 506 | SUPERFAMILY | Protein kinase-like (PK-like) | 169 | 460 | IPR011009 | - | |
Cma02g00038 | 506 | Gene3D | Phosphorylase Kinase; domain 1 | 166 | 260 | - | - | |
Cma02g00038 | 506 | CDD | STKc_IRAK | 191 | 457 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00038 | Cma19g01083 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00038 | Cma-Chr2:195273 | Cma20g00260 | Cma-Chr20:1270014 | 0 | dispersed | |
Cma11g01962 | Cma-Chr11:12853356 | Cma02g00038 | Cma-Chr2:195273 | 0 | wgd | |
Cma19g01083 | Cma-Chr19:9013783 | Cma02g00038 | Cma-Chr2:195273 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68310 | PF00069 | Pkinase | 2.70E-48 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00038 | - | - | csv:101214087 | 878.626 |