Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00039 ATGGTGGGCTTCTGTACTTGTGATCCGGTAGTTCTTCTCGCTTCAGAAGTTTGGACTTCCCTCATTTTGCCCAGAATGCAGCAAGATCAACACAAAAAGTTTATGCAACAGAATTCAACCGAAGTGGAGTTCTTCTCTGATTATGGCGATGCCAGTCGATACAAAATTCAGGAGGTAATCGGGAAAGGAAGCTATGGTGTGGTGTGTTCTGCTATCGACACTCGCACCGGCGACAAGGTTGCTATAAAGAAGATTCATAATATTTTTGAGCATATATCTGATGCTGTCAGAATTCTCCGTGAGATAAAGCTGCTTAGACTTCTTCGTCATCCTGATATTGTTGAAATTAAACACATTATGCTCCCTCCTTCAAGGAGGGACTTCAAAGATATCTACGTTGTTTTTGAGCTCATGGAATCTGATCTTCATCAAGTTATTAAAGCAAACGATGATCTGACTCGAGAACACTATCAGTTTTTTCTCTATCAACTTCTTCGTGCGTTAAAGTATATTCATACAGCGAATGTCTACCATCGGGATTTGAAACCAAAGAATATATTGGCGAATGCAAATTGTAAACTTAAAATTTGTGATTTTGGATTGGCAAGAGTTGCGTTTAGTGACACGCCAACGACAGTTTTCTGGACGTATACACCTGCAATTGATATTTGGAGTATTGGCTGCATATTTGCTGAAGTATTAATGGGGAAGCCACTTTTTCCTGGCAAAAACGTTGTTCACCAGCTCGATTTGATGACGGACCTTCTTGGAACTCCTTCATTAGATACAATCTCCAGGGTTCGTAACGACAAGGCTAGACGATATTTAACGACCATGCGGAAAAAGCAGCCGGTTTCATTTGCTCAAAAGTTTCCAAATGCTGATCCTTTAGCGCTGAGGCTATTAGAAAGGTTGCTTGCTTTTGATCCAAAAGATAGGCCAACTGCTGAAGAGGCATTGGCAGATCCATACTTCAAGGGATTGGCGAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCACAAAGATGGAATTTGAATTTGAGAGGCGGAGGGTAATAAAAGAAGACATTCAAGAGCTAATCTTCCGTGAGATATTAGAATATCATCCCCAGCTACTAAAAGACTACATGAATGGGACTGAGAGAACAAATTTTCTATATCCAAGTGCTGTTGATCAATTTAGAAAGCAGTTTGCACATCTGGAGGAAAATGGTGGTAAAAGTGCACCGGCAATTCCTCTCGACAGAAAGCACGTATCCCTCCCAAGGTCAACAGTTGTACACTCGAACCCGGTCTATTCTAAGGACCAACTAAATAACGTACCCGTCCAAGATGGGAAGATCTCCGAACAGGCATACAGCAAGAATTCCCGAGATAGCGAAGGACGGCTAACAAATATATCAAGAACCTTGCAGGCACCACAAAAGATCCCATTTGCCAAGCCTGGAAGAGTGGTTGGACCAGTTATAGCAGATGAAAGCGGAATGCGAGTGAAGGAACCATACGATCCTAGAACGTTGATCAGAGGTGCCATTCTTCCTCCTGCATACCATTACCAGAAACCCTATGCAGCAAATCAAGAAAGATCTGCAGCAGAAACGAAACTGGATATTTCACTAAGGGCCACCAAGCAAGCTTCCCAGTGTGGCATGGCTTCCCAAATAGGAACAGACATAGCCATCAGCATTGACCCGAACCCCTTTTATATGACACGTGCCGGAGTGAACAAGATCGAACTCAAGGACCAAATATCCATTGACGCTAACTTTCTACAGGCCAAGGCCTCCCAATACAGTGGCATTGGTGCAGCAACCGCCACCACCACCTCGGTTGCTCACAGAAAGGTCGTTGCCGGTCAGTTTAGCATGACAAAGATGTACTAA 1884 43.42 MVGFCTCDPVVLLASEVWTSLILPRMQQDQHKKFMQQNSTEVEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVSFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVIKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPAIPLDRKHVSLPRSTVVHSNPVYSKDQLNNVPVQDGKISEQAYSKNSRDSEGRLTNISRTLQAPQKIPFAKPGRVVGPVIADESGMRVKEPYDPRTLIRGAILPPAYHYQKPYAANQERSAAETKLDISLRATKQASQCGMASQIGTDIAISIDPNPFYMTRAGVNKIELKDQISIDANFLQAKASQYSGIGAATATTTSVAHRKVVAGQFSMTKMY 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 202860 206862 + CmaCh02G000390.1 Cma02g00039 287790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00039 627 CDD STKc_TDY_MAPK 53 370 - -
Cma02g00039 627 ProSitePatterns MAP kinase signature. 89 192 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma02g00039 627 ProSiteProfiles Protein kinase domain profile. 54 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00039 627 Gene3D Transferase(Phosphotransferase) domain 1 140 348 - -
Cma02g00039 627 SMART serkin_6 54 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00039 627 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 503 - -
Cma02g00039 627 SUPERFAMILY Protein kinase-like (PK-like) 50 329 IPR011009 -
Cma02g00039 627 Pfam Protein kinase domain 54 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00039 627 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 503 - -
Cma02g00039 627 Gene3D Phosphorylase Kinase; domain 1 69 371 - -
Cma02g00039 627 ProSitePatterns Protein kinases ATP-binding region signature. 60 84 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00039 Cma-Chr2:202860 Cma08g01177 Cma-Chr8:7244497 0 dispersed
Cma11g01956 Cma-Chr11:12834957 Cma02g00039 Cma-Chr2:202860 0 wgd
Cma19g01072 Cma-Chr19:8971067 Cma02g00039 Cma-Chr2:202860 6.56E-90 wgd
Cma02g00039 Cma-Chr2:202860 Cma20g00258 Cma-Chr20:1252413 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68311 PF00069 Pkinase 2.00E-55 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00039 - - csv:101216657 1096.26