Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00045 ATGGATTCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCGTCGCTCCAGCCGGAACGGCAAGGCTCGACAGCGGTTGCTGAGGAGTTGGATGATTCGATCGCGATTGATCCTGGGATTAAGCTGATGTACCTGTCGAATGATGGCGACTCGGATGGGATTAGAGAGCTGCTGGATTCGGGTGCCGACGTGAATTTTCGCGACATTGACGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCAGGCCGGAGATTGTTGAGATACTACTCGAAAGAGGAGCGGAGGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCAGGAAGTGATCAAGCTCTTAGAGAAACATGGTGCTAGGCTACCGATGGCTCCAATGCTTGTGCAAAATGCTCTTGAAGTCCCGGAATATGAGATCAATCCAAATGAGCTTGATTTTTCTCAGAGTGTGAACATTACAAAAGGAACTTTCTGCATTGCATCATGGCGGGGAATTGAAGTTGCTGTGAAGACACTAGGAGAGGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTCAGGGATGAACTTGCTTTACTTCAAAAGATACGGCATCCTAACGTTGTCCAATTTTTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCATGGAGTATTTGCCACAGGGAGACCTTCATGCATACTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTTGTTAAGTTTGCTCTTGACATTGCTAGGGGAATGAATTATTTACATGAGCATAAACCTGAAGCAATAATTCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTATGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTGAAATTGTCAAATAGGGTCAAAGAAGACAGACCTGTGGCTGTGGCATGTCATGATACTTCATGGCGATATGTGGCGCCTGAGGTTTATAAAGATGAAGAATACGATACGAAAGTGGATGTATTTTCATTTGCCTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAACGAAGTACCTAAAGCTTATATAGCTGGTGAACGCCCACCATTTATGGCTCCAACTAAGCGTTATGCAGATGGAGTGAAGGAGCTAATCGAGGAATGTTGGGAAGAGAAGCCACATAAAAGACCCACGTTTCGGCAAATTATAAGAAGGTTGGAGGATATCAACAATGAACTTATGCACACAAGGAGCTTGAAGGTGAATCATTTCTGCAATTGTTTCGGGAACCTGACAGCCTTGTTTAAAAGGGAAAGGACTAATCCAGGCAGCAGATCTTTCTCAAAAAGCAAATGA 1383 44.54 MDSNVRARFTLGKQSSLQPERQGSTAVAEELDDSIAIDPGIKLMYLSNDGDSDGIRELLDSGADVNFRDIDGRTSLHVAACQGRPEIVEILLERGAEVDVQDRWGSTPLADAIYYKNQEVIKLLEKHGARLPMAPMLVQNALEVPEYEINPNELDFSQSVNITKGTFCIASWRGIEVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVMEYLPQGDLHAYLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSMHLKVADFGVSKLLKLSNRVKEDRPVAVACHDTSWRYVAPEVYKDEEYDTKVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFMAPTKRYADGVKELIEECWEEKPHKRPTFRQIIRRLEDINNELMHTRSLKVNHFCNCFGNLTALFKRERTNPGSRSFSKSK 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 224626 231659 - CmaCh02G000450.1 Cma02g00045 287796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00045 460 SUPERFAMILY Protein kinase-like (PK-like) 164 416 IPR011009 -
Cma02g00045 460 Gene3D Transferase(Phosphotransferase) domain 1 142 436 - -
Cma02g00045 460 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Cma02g00045 460 CDD STKc_MAP3K-like 162 415 - -
Cma02g00045 460 MobiDBLite consensus disorder prediction 1 25 - -
Cma02g00045 460 Pfam Protein tyrosine and serine/threonine kinase 170 415 IPR001245 GO:0004672|GO:0006468
Cma02g00045 460 PIRSF ILK 2 436 - -
Cma02g00045 460 Gene3D - 7 141 IPR036770 -
Cma02g00045 460 Pfam Ankyrin repeats (3 copies) 43 130 IPR002110 GO:0005515
Cma02g00045 460 MobiDBLite consensus disorder prediction 1 23 - -
Cma02g00045 460 SMART ANK_2a 22 67 IPR002110 GO:0005515
Cma02g00045 460 SMART ANK_2a 71 100 IPR002110 GO:0005515
Cma02g00045 460 SMART ANK_2a 104 133 IPR002110 GO:0005515
Cma02g00045 460 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Cma02g00045 460 SUPERFAMILY Ankyrin repeat 22 132 IPR036770 -
Cma02g00045 460 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 441 - -
Cma02g00045 460 ProSiteProfiles Protein kinase domain profile. 121 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00045 460 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 9 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00045 Cma-Chr2:224626 Cma03g01354 Cma-Chr3:8629792 0 dispersed
Cma20g00114 Cma-Chr20:526262 Cma02g00045 Cma-Chr2:224626 3.17E-16 dispersed
Cma02g00045 Cma-Chr2:224626 Cma20g00249 Cma-Chr20:1220467 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68312 PF07714 PK_Tyr_Ser-Thr 9.40E-58 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00045 - - cpep:111777411 799.66