Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00045 | ATGGATTCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCGTCGCTCCAGCCGGAACGGCAAGGCTCGACAGCGGTTGCTGAGGAGTTGGATGATTCGATCGCGATTGATCCTGGGATTAAGCTGATGTACCTGTCGAATGATGGCGACTCGGATGGGATTAGAGAGCTGCTGGATTCGGGTGCCGACGTGAATTTTCGCGACATTGACGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCAGGCCGGAGATTGTTGAGATACTACTCGAAAGAGGAGCGGAGGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCAGGAAGTGATCAAGCTCTTAGAGAAACATGGTGCTAGGCTACCGATGGCTCCAATGCTTGTGCAAAATGCTCTTGAAGTCCCGGAATATGAGATCAATCCAAATGAGCTTGATTTTTCTCAGAGTGTGAACATTACAAAAGGAACTTTCTGCATTGCATCATGGCGGGGAATTGAAGTTGCTGTGAAGACACTAGGAGAGGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTCAGGGATGAACTTGCTTTACTTCAAAAGATACGGCATCCTAACGTTGTCCAATTTTTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCATGGAGTATTTGCCACAGGGAGACCTTCATGCATACTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTTGTTAAGTTTGCTCTTGACATTGCTAGGGGAATGAATTATTTACATGAGCATAAACCTGAAGCAATAATTCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTATGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTGAAATTGTCAAATAGGGTCAAAGAAGACAGACCTGTGGCTGTGGCATGTCATGATACTTCATGGCGATATGTGGCGCCTGAGGTTTATAAAGATGAAGAATACGATACGAAAGTGGATGTATTTTCATTTGCCTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAACGAAGTACCTAAAGCTTATATAGCTGGTGAACGCCCACCATTTATGGCTCCAACTAAGCGTTATGCAGATGGAGTGAAGGAGCTAATCGAGGAATGTTGGGAAGAGAAGCCACATAAAAGACCCACGTTTCGGCAAATTATAAGAAGGTTGGAGGATATCAACAATGAACTTATGCACACAAGGAGCTTGAAGGTGAATCATTTCTGCAATTGTTTCGGGAACCTGACAGCCTTGTTTAAAAGGGAAAGGACTAATCCAGGCAGCAGATCTTTCTCAAAAAGCAAATGA | 1383 | 44.54 | MDSNVRARFTLGKQSSLQPERQGSTAVAEELDDSIAIDPGIKLMYLSNDGDSDGIRELLDSGADVNFRDIDGRTSLHVAACQGRPEIVEILLERGAEVDVQDRWGSTPLADAIYYKNQEVIKLLEKHGARLPMAPMLVQNALEVPEYEINPNELDFSQSVNITKGTFCIASWRGIEVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVMEYLPQGDLHAYLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSMHLKVADFGVSKLLKLSNRVKEDRPVAVACHDTSWRYVAPEVYKDEEYDTKVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFMAPTKRYADGVKELIEECWEEKPHKRPTFRQIIRRLEDINNELMHTRSLKVNHFCNCFGNLTALFKRERTNPGSRSFSKSK | 460 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 224626 | 231659 | - | CmaCh02G000450.1 | Cma02g00045 | 287796 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00045 | 460 | SUPERFAMILY | Protein kinase-like (PK-like) | 164 | 416 | IPR011009 | - | |
Cma02g00045 | 460 | Gene3D | Transferase(Phosphotransferase) domain 1 | 142 | 436 | - | - | |
Cma02g00045 | 460 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 103 | - | - | |
Cma02g00045 | 460 | CDD | STKc_MAP3K-like | 162 | 415 | - | - | |
Cma02g00045 | 460 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cma02g00045 | 460 | Pfam | Protein tyrosine and serine/threonine kinase | 170 | 415 | IPR001245 | GO:0004672|GO:0006468 | |
Cma02g00045 | 460 | PIRSF | ILK | 2 | 436 | - | - | |
Cma02g00045 | 460 | Gene3D | - | 7 | 141 | IPR036770 | - | |
Cma02g00045 | 460 | Pfam | Ankyrin repeats (3 copies) | 43 | 130 | IPR002110 | GO:0005515 | |
Cma02g00045 | 460 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cma02g00045 | 460 | SMART | ANK_2a | 22 | 67 | IPR002110 | GO:0005515 | |
Cma02g00045 | 460 | SMART | ANK_2a | 71 | 100 | IPR002110 | GO:0005515 | |
Cma02g00045 | 460 | SMART | ANK_2a | 104 | 133 | IPR002110 | GO:0005515 | |
Cma02g00045 | 460 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515 | |
Cma02g00045 | 460 | SUPERFAMILY | Ankyrin repeat | 22 | 132 | IPR036770 | - | |
Cma02g00045 | 460 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 9 | 441 | - | - | |
Cma02g00045 | 460 | ProSiteProfiles | Protein kinase domain profile. | 121 | 423 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g00045 | 460 | PANTHER | INTEGRIN-LINKED KINASE FAMILY PROTEIN | 9 | 441 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00045 | Cma-Chr2:224626 | Cma03g01354 | Cma-Chr3:8629792 | 0 | dispersed | |
Cma20g00114 | Cma-Chr20:526262 | Cma02g00045 | Cma-Chr2:224626 | 3.17E-16 | dispersed | |
Cma02g00045 | Cma-Chr2:224626 | Cma20g00249 | Cma-Chr20:1220467 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68312 | PF07714 | PK_Tyr_Ser-Thr | 9.40E-58 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00045 | - | - | cpep:111777411 | 799.66 |