Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00060 ATGCGGCGAGGCAGGCCCTCAGATCCATTTACAGCGACAGAAGTGCCGAAATCTACCGTTCAGCGCGAGAATCCTCTCAAAGAGATCCGATACAGAGGCGTTCGGAAGCGTCCTTGGGGAAGATACGCCGCGGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTTGATTCCGCTGAAGAGGCTGCTCGTGCTTACGATACTGCTGCTCGGTCCCTCCGTGGAGCCAAGGCCAAAACTAACTTTCCTTTACATCCATCGACGATTTCGATTCAGCAACCTATTCCGTTTTATCAATCGCCGCCGGATTTGATCGATTCGAACGGTTTTGGCAAGATAGAGTGTGTCCAGGCTAATAGGCCTACGTCGAGCAGCTTGAGTTCCACTGTTGAGTCGTTTAGTGGACCGCGGATTTCTAACCCTTTGTCGTCGTTGTCGATGGTTCCCCGGAGGCCGGTGCAGCCTGTTTCGCCCGACGACTGCCATAGCGACTGTGATTCCTCCTCCTCGGTTGTTGATGATGATGAGGTCTGTGTTCTCGCTTCTTTCCGTAGAGCCTTGCCGTTCGATCTTAACTTACCACCTCCCATGGACGTCGTGGATTTAACTGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA 657 52.21 MRRGRPSDPFTATEVPKSTVQRENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDTAARSLRGAKAKTNFPLHPSTISIQQPIPFYQSPPDLIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVPRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 289320 289976 - CmaCh02G000600.1 Cma02g00060 287811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00060 218 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Cma02g00060 218 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Cma02g00060 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 193 - -
Cma02g00060 218 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Cma02g00060 218 MobiDBLite consensus disorder prediction 1 26 - -
Cma02g00060 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 23 193 - -
Cma02g00060 218 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Cma02g00060 218 MobiDBLite consensus disorder prediction 148 173 - -
Cma02g00060 218 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Cma02g00060 218 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Cma02g00060 218 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Cma02g00060 218 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00060 Cma19g00998 CCT
Cma02g00060 Cma11g01910 CCT
Cma02g00060 Cma19g00998 ECH
Cma02g00060 Cma11g01910 ECH
Cma02g00060 Cma20g00238 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00060 Cma-Chr2:289320 Cma16g00908 Cma-Chr16:6781618 8.41E-44 dispersed
Cma12g00034 Cma-Chr12:130502 Cma02g00060 Cma-Chr2:289320 1.02E-29 dispersed
Cma11g01938 Cma-Chr11:12753400 Cma02g00060 Cma-Chr2:289320 5.94E-74 wgd
Cma19g01051 Cma-Chr19:8879470 Cma02g00060 Cma-Chr2:289320 3.05E-77 wgd
Cma02g00060 Cma-Chr2:289320 Cma20g00238 Cma-Chr20:1154440 4.95E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34400 PF00847 AP2 8.20E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00060 K09286 - csv:101221703 384.8