Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00061 | ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATGTCTCGGAGGCGCTCTGGCGGTTGGAAATTAGCGATAATCAAGATGGAGGCGACGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTGTATTATATGAGAACTGGCTCTTGTAGCTATGGAAGTAATTGTCGTTTCAATCATCCTGTCTACGTTGCTCAGGGTGCTCTTTATAATGGGGAATTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACGGGGACATGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAACATTTTAGGTCTTCCCATGCGGCAGGAAGAAAAGTCGTGTTCTTATTATTTGCGCACGGGATCATGTAAATTTGGAGTTTCATGCAAGTTTAATCATCCCCAGCCAGCACCAGTTGGAAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTAGTGGAATTCCTGCTTGGTCATTGCCTAGAATGCAATATATGCCTGGTCCATGTGTTCAAGGCCAACAATCTTATGTGCCTGTCCTGGTTTCTCCACCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTATGTGAGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTATAATTCTGTCAATTTGGAAGACTCGCATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCTAACGCTACCCGATCGACCCGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTTCATCATCCGAAACAAAGAATTGCACAATCAGTAATGAATGTGCTTGGGCTTCCTTCAAGACCCGGGCAAGCTGTATGTTCATACTACAGTATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAACTATGGCTTCACTCTGCCTGTGCTCAATTCATCTTTCATGAAGTATCCCAGCAACAACTATACGTTGTCATCGCACGATACCTTGCCCCAGACGGTATCCAAATCGTCTGAATGGGTTCAGAAAGCTGATCCTCCGAACGACAAACAGCAAACTACCGATACGAAAGTTGATGATGGCACAGCTGAAGAGGTTTCCTCTGTTTCATGCTCATTATCAGGTGGTTCTGAAACTTTACAAGATCAATCTGGTTGA | 1308 | 44.88 | MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCSYYLRTGSCKFGVSCKFNHPQPAPVGNMLPQARPGALGSAGTPFMPSSGLPYASGIPAWSLPRMQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVSNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSVMNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSSFMKYPSNNYTLSSHDTLPQTVSKSSEWVQKADPPNDKQQTTDTKVDDGTAEEVSSVSCSLSGGSETLQDQSG | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 292949 | 296668 | - | CmaCh02G000610.1 | Cma02g00061 | 287812 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00061 | 435 | MobiDBLite | consensus disorder prediction | 384 | 399 | - | - | |
Cma02g00061 | 435 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cma02g00061 | 435 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872 | |
Cma02g00061 | 435 | Gene3D | - | 271 | 353 | - | - | |
Cma02g00061 | 435 | Gene3D | - | 46 | 121 | - | - | |
Cma02g00061 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 319 | 347 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 116 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | Gene3D | - | 122 | 170 | - | - | |
Cma02g00061 | 435 | SUPERFAMILY | CCCH zinc finger | 319 | 344 | IPR036855 | GO:0046872 | |
Cma02g00061 | 435 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | SMART | c3hfinal6 | 319 | 346 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | SMART | c3hfinal6 | 276 | 303 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | SMART | c3hfinal6 | 88 | 115 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | SUPERFAMILY | CCCH zinc finger | 132 | 161 | IPR036855 | GO:0046872 | |
Cma02g00061 | 435 | SUPERFAMILY | CCCH zinc finger | 279 | 304 | IPR036855 | GO:0046872 | |
Cma02g00061 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 303 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 72 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 160 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 115 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 321 | 345 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 | 7 | 405 | - | - | |
Cma02g00061 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 304 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cma02g00061 | 435 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872 | |
Cma02g00061 | 435 | MobiDBLite | consensus disorder prediction | 384 | 435 | - | - | |
Cma02g00061 | 435 | SUPERFAMILY | CCCH zinc finger | 51 | 73 | IPR036855 | GO:0046872 | |
Cma02g00061 | 435 | PANTHER | PROTEIN PHOSPHATASE RELATED | 7 | 405 | - | - | |
Cma02g00061 | 435 | MobiDBLite | consensus disorder prediction | 413 | 435 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00061 | Cma20g00237 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00061 | Cma-Chr2:292949 | Cma10g00830 | Cma-Chr10:3873704 | 3.52E-96 | dispersed | |
Cma02g00061 | Cma-Chr2:292949 | Cma20g00237 | Cma-Chr20:1145042 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34401 | PF00642 | zf-CCCH | 3.80E-08 | CL0537 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00061 | - | - | csv:101221933 | 825.083 |