Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00061 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATGTCTCGGAGGCGCTCTGGCGGTTGGAAATTAGCGATAATCAAGATGGAGGCGACGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTGTATTATATGAGAACTGGCTCTTGTAGCTATGGAAGTAATTGTCGTTTCAATCATCCTGTCTACGTTGCTCAGGGTGCTCTTTATAATGGGGAATTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACGGGGACATGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAACATTTTAGGTCTTCCCATGCGGCAGGAAGAAAAGTCGTGTTCTTATTATTTGCGCACGGGATCATGTAAATTTGGAGTTTCATGCAAGTTTAATCATCCCCAGCCAGCACCAGTTGGAAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTAGTGGAATTCCTGCTTGGTCATTGCCTAGAATGCAATATATGCCTGGTCCATGTGTTCAAGGCCAACAATCTTATGTGCCTGTCCTGGTTTCTCCACCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTATGTGAGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTATAATTCTGTCAATTTGGAAGACTCGCATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCTAACGCTACCCGATCGACCCGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTTCATCATCCGAAACAAAGAATTGCACAATCAGTAATGAATGTGCTTGGGCTTCCTTCAAGACCCGGGCAAGCTGTATGTTCATACTACAGTATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAACTATGGCTTCACTCTGCCTGTGCTCAATTCATCTTTCATGAAGTATCCCAGCAACAACTATACGTTGTCATCGCACGATACCTTGCCCCAGACGGTATCCAAATCGTCTGAATGGGTTCAGAAAGCTGATCCTCCGAACGACAAACAGCAAACTACCGATACGAAAGTTGATGATGGCACAGCTGAAGAGGTTTCCTCTGTTTCATGCTCATTATCAGGTGGTTCTGAAACTTTACAAGATCAATCTGGTTGA 1308 44.88 MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCSYYLRTGSCKFGVSCKFNHPQPAPVGNMLPQARPGALGSAGTPFMPSSGLPYASGIPAWSLPRMQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVSNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSVMNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSSFMKYPSNNYTLSSHDTLPQTVSKSSEWVQKADPPNDKQQTTDTKVDDGTAEEVSSVSCSLSGGSETLQDQSG 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 292949 296668 - CmaCh02G000610.1 Cma02g00061 287812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00061 435 MobiDBLite consensus disorder prediction 384 399 - -
Cma02g00061 435 MobiDBLite consensus disorder prediction 1 20 - -
Cma02g00061 435 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Cma02g00061 435 Gene3D - 271 353 - -
Cma02g00061 435 Gene3D - 46 121 - -
Cma02g00061 435 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cma02g00061 435 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Cma02g00061 435 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Cma02g00061 435 Gene3D - 122 170 - -
Cma02g00061 435 SUPERFAMILY CCCH zinc finger 319 344 IPR036855 GO:0046872
Cma02g00061 435 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cma02g00061 435 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Cma02g00061 435 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Cma02g00061 435 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Cma02g00061 435 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Cma02g00061 435 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872
Cma02g00061 435 SUPERFAMILY CCCH zinc finger 279 304 IPR036855 GO:0046872
Cma02g00061 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Cma02g00061 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Cma02g00061 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872
Cma02g00061 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Cma02g00061 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Cma02g00061 435 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 7 405 - -
Cma02g00061 435 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Cma02g00061 435 MobiDBLite consensus disorder prediction 1 17 - -
Cma02g00061 435 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Cma02g00061 435 MobiDBLite consensus disorder prediction 384 435 - -
Cma02g00061 435 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872
Cma02g00061 435 PANTHER PROTEIN PHOSPHATASE RELATED 7 405 - -
Cma02g00061 435 MobiDBLite consensus disorder prediction 413 435 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00061 Cma20g00237 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00061 Cma-Chr2:292949 Cma10g00830 Cma-Chr10:3873704 3.52E-96 dispersed
Cma02g00061 Cma-Chr2:292949 Cma20g00237 Cma-Chr20:1145042 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34401 PF00642 zf-CCCH 3.80E-08 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00061 - - csv:101221933 825.083