Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00065 ATGAAATTTGTAGAGCAGAGCTTGAAGCAACAGTCGGGACAGATATGCAAGACTATTGAGGTCGATGTAACTGATCACCATCGCAGTGCATCGTCGATGGTCGAATTGGAAGCTTCTGAAGATTGCGAGAGGGATGGACCGGATGGTGATGGCCTCTATATTCCTCCCCTCAACTTTTCCATGGTTGATAATGGAATTTTCCGCTCCGGCTTCCCTAATTCTGCTAACTTCTCCTTTCTCCAAACCCTAGGCCTCCGTTCCATTATATGTCTATGTCCGGAACCGTATCCGGAACACAACATGGAGTTTCTCAAGTATAACGGAATCAGATTGTATCAATTTGGAATCGAGAGCTATAAGGAGCCTTTTGTGAATATCCCAGATGATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCAATCCTCATACATTGCAAGAGAGGAAAGCATCGAACAGGTTGCCTTGTCGGATGCCTGAGAAAATTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAGAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTTATGGAATTGTTCGATATCTCCGACTTGAGGCATCTTCCCATGTCATTCTCATGCTCAAAGAGGTGA 648 44.75 MKFVEQSLKQQSGQICKTIEVDVTDHHRSASSMVELEASEDCERDGPDGDGLYIPPLNFSMVDNGIFRSGFPNSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKYNGIRLYQFGIESYKEPFVNIPDDMIREALKVVLDDRNHPILIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDLRHLPMSFSCSKR 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 304907 308002 + CmaCh02G000650.1 Cma02g00065 287816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00065 215 PRINTS Plant and fungal dual specificity phosphatase signature 53 70 IPR020428 GO:0016791
Cma02g00065 215 PRINTS Plant and fungal dual specificity phosphatase signature 126 140 IPR020428 GO:0016791
Cma02g00065 215 PRINTS Plant and fungal dual specificity phosphatase signature 109 123 IPR020428 GO:0016791
Cma02g00065 215 PRINTS Plant and fungal dual specificity phosphatase signature 90 103 IPR020428 GO:0016791
Cma02g00065 215 PANTHER TYROSINE-PROTEIN PHOSPHATASE 8 213 - -
Cma02g00065 215 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 121 161 IPR000387 GO:0016311|GO:0016791
Cma02g00065 215 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 200 IPR029021 -
Cma02g00065 215 CDD PFA-DSP_Siw14 52 199 - -
Cma02g00065 215 Pfam Tyrosine phosphatase family 53 202 IPR004861 -
Cma02g00065 215 Gene3D Protein tyrosine phosphatase superfamily 53 202 IPR029021 -
Cma02g00065 215 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 8 213 - -
Cma02g00065 215 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Cma02g00065 215 ProSiteProfiles Dual specificity protein phosphatase domain profile. 58 212 IPR020422 GO:0006470|GO:0008138
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00065 Cma20g00235 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00065 Cma-Chr2:304907 Cma11g00940 Cma-Chr11:4935931 3.92E-79 dispersed
Cma11g01936 Cma-Chr11:12737190 Cma02g00065 Cma-Chr2:304907 5.73E-103 wgd
Cma19g01048 Cma-Chr19:8861806 Cma02g00065 Cma-Chr2:304907 1.84E-84 wgd
Cma02g00065 Cma-Chr2:304907 Cma20g00235 Cma-Chr20:1119634 2.05E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00065 K18045 - csv:101222170 370.163