Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00083 ATGGAGGATCAGCGAGATGACGTTGCACAATCAGAGCAAGGGCCTTCCAATGCTACCTGGTGGTCTTCTGATTTCGTGGAGAAGTTTGGATCTGTTTCTTTGGGCCCTCCGGAAGATACTGTAAGTGAAAAGGAAGAGCTCATCAATTCTGACCAAGATGCGTTGTTGTCGCCTCAAAGAGCATCTCAAATTCTCTGGCGTACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATTCCGGACAAAAGGCTAAAAGAGCAGTTCCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAAAAACGATGTTATTCTTGTGGAGACGGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCAAATCCAGCTGCAATTATCAAGAAGATCGCAGGACTGGTTTCTGACTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCCGCTGTAGAAGAAACCTCCCACTTGTTTGAGGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCATGCCGTCCAAGAGCCATCTTATTTAAGTCTTTGGCAGACACAGTAGGGCTCGAAAGCCGTCTCATGGTGGGCTTGCCAAATGAGGGGGCTATTGGGTGCGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTCGTTGATCTTATGCGATTTCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTTATGACCCATATTTCTGCCGCTGGGGAAAGTGATTCTGCAGAAAACGACTCCTGTGATTCACCTCTGGAACCTAATAGTCCTCTTTATGGGTTCTCAGAGAGAGTTGATCCCGACAGTGTTGAAAAAGATGAGAGCCTTCAATTCCAGAGAAAATTTGATGCAGCTTCTAATGCATATGGTCCTAAATTGCGCAACTGGATGTTGCGTTCAAGTACAACACTTGACAGCAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGTGGCCGGTCCATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGCGCTTCAACTTCAGAAGCACGTCGAATAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGACTGTGCGAGCAATGAATGAAACAATGAAGCAAAATCGTCTTTTGAGAGGACAAACAGATGACAGGTCGTTCTCCCACCCTTCAAATGAACGAAATAGTAGTTCAGATGTTCGAAGAAATGATCCATTGGGTTCTCAAAGAGCAATATCATTACCAACATCGCCACATGAGTATAGGGGTCAAACCTCTGATAGAAGTGAACATTCGGCATTTGCGAATGATGATTTAGCCTCAAAATGGACTAAAGTTCTTGAATCCTTCTCCATGAACGAAAAACCACTATTACCTTACCCAGAATGGAACATTGATTACTCAGAACTCACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACAGATGTGGCGATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAATGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTTTATTGTTTCTGGGTGCATGCACAAAGCCGCCACGATTATCAATGGTCAGTGAATACATGGAAATGGGCTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAAAAAAAACTAAGCTGGCGGAGAAGACTAAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACATCGAATGAAAATTGCTCATCGGGATCTAAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACTGTCAAGATATGTGATTTTGGACTTTCAAGAGTATTGACTGAGGATCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCCGAGCTCTTCCGAAATGAACCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAGTAGACCGTGGGAGGGTGTTCCACAAGAGCGGGTAGTTTATGCTGTTGGCACCGAGGGAGCACGGCTAGAGATTCCTGAAGGACCCCTTGGCAGACTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTCGACTGCGAGTACTCGCTTTCTTGA 2391 43.96 MEDQRDDVAQSEQGPSNATWWSSDFVEKFGSVSLGPPEDTVSEKEELINSDQDALLSPQRASQILWRTGMLCEPIPDGFYSVIPDKRLKEQFHSIPSLDELRALEAEGYKNDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAAVEETSHLFEDRGIQLLGQIKFGSCRPRAILFKSLADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSVEKDESLQFQRKFDAASNAYGPKLRNWMLRSSTTLDSKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSEARRIRRRSISITPEIGDDIVRTVRAMNETMKQNRLLRGQTDDRSFSHPSNERNSSSDVRRNDPLGSQRAISLPTSPHEYRGQTSDRSEHSAFANDDLASKWTKVLESFSMNEKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVLLFLGACTKPPRLSMVSEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRVLTEDPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPQERVVYAVGTEGARLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 401409 408974 - CmaCh02G000830.1 Cma02g00083 287834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00083 796 MobiDBLite consensus disorder prediction 384 401 - -
Cma02g00083 796 Pfam Protein tyrosine and serine/threonine kinase 541 788 IPR001245 GO:0004672|GO:0006468
Cma02g00083 796 MobiDBLite consensus disorder prediction 471 492 - -
Cma02g00083 796 Pfam Ethylene-responsive protein kinase Le-CTR1 59 254 - -
Cma02g00083 796 ProSiteProfiles Protein kinase domain profile. 540 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00083 796 SUPERFAMILY Protein kinase-like (PK-like) 516 788 IPR011009 -
Cma02g00083 796 MobiDBLite consensus disorder prediction 447 470 - -
Cma02g00083 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 659 671 IPR008271 GO:0004672|GO:0006468
Cma02g00083 796 MobiDBLite consensus disorder prediction 273 297 - -
Cma02g00083 796 CDD STKc_MAP3K-like 546 788 - -
Cma02g00083 796 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 794 - -
Cma02g00083 796 PANTHER MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN-RELATED 30 794 - -
Cma02g00083 796 MobiDBLite consensus disorder prediction 362 417 - -
Cma02g00083 796 MobiDBLite consensus disorder prediction 442 503 - -
Cma02g00083 796 Gene3D Transferase(Phosphotransferase) domain 1 619 795 - -
Cma02g00083 796 ProSitePatterns Protein kinases ATP-binding region signature. 546 567 IPR017441 GO:0005524
Cma02g00083 796 Gene3D Phosphorylase Kinase; domain 1 533 618 - -
Cma02g00083 796 SMART serkin_6 540 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00083 Cma-Chr2:401409 Cma09g00335 Cma-Chr9:1377586 2.42E-77 dispersed
Cma02g00083 Cma-Chr2:401409 Cma20g00216 Cma-Chr20:1031349 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68313 PF07714 PK_Tyr_Ser-Thr 9.20E-59 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00083 - - csv:101220859 1462.97