Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00095 ATGGCGCCTCCAACCCTTGCTGGGTTCCTGGCCCTCGCCCTCTCTTTACTTGCTGCTATGGTTTCCTCTTCTGATGCCTACAAATTCTATGTCGGCGGCAGAGATGGCTGGGTTCCAAACCCTTCTGAGAACTTCAATCACTGGGCTGAGCGCAACCGGTTCCAAGTCAATGATACTCTTTATTTCAAGTATAAAAACGGGACGGATTCTGTGTTGGTTGTAAGCAAGGAAGATTATTTCTCTTGCAATACCAAAAACCCAGTAATTACCCTAAAAGATGGTGAATCAATCTTCAAATTTGGTCATTCGGGTCCGTTTTATTTCATAAGTGGAGACGCTGATAGGTGCCAGAAGGGTCAACGGCTCATTGTTGTGGTTCTTGCTGTGAGGCATAAACAGCATCTTGCTCCGTCGCCACAAGCTCCGACCCCGACTGCTCAGTCACCGGAAAACGCTGGTTCGCCGGAATCCGGCGTTGGATTCACAGCGCCGGTTCCAGCTCCAGCGAAGAGTTCTGCTTTTGGAGGGTCTGCCGCTAGTGAAGCTAGAAATGGCGATCGGAACTCATCGTCGGAATCTTCGCCGGCGGATGGGTTCCCCCGTGGCCGCTTGAAGAAGCTCCTCCAGCCAATTGGTGGTGAGAGTTCTCTTATTTATAATCATTTACAGAATACAGAAATAAGGTAA 687 49.34 MAPPTLAGFLALALSLLAAMVSSSDAYKFYVGGRDGWVPNPSENFNHWAERNRFQVNDTLYFKYKNGTDSVLVVSKEDYFSCNTKNPVITLKDGESIFKFGHSGPFYFISGDADRCQKGQRLIVVVLAVRHKQHLAPSPQAPTPTAQSPENAGSPESGVGFTAPVPAPAKSSAFGGSAASEARNGDRNSSSESSPADGFPRGRLKKLLQPIGGESSLIYNHLQNTEIR 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 485515 488631 + CmaCh02G000950.1 Cma02g00095 287846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00095 228 MobiDBLite consensus disorder prediction 138 155 - -
Cma02g00095 228 PANTHER BLUE COPPER PROTEIN 9 149 IPR039391 GO:0009055
Cma02g00095 228 CDD OsENODL1_like 27 127 IPR041846 -
Cma02g00095 228 PANTHER EARLY NODULIN-LIKE PROTEIN 2 9 149 - -
Cma02g00095 228 MobiDBLite consensus disorder prediction 182 196 - -
Cma02g00095 228 ProSiteProfiles Phytocyanin domain profile. 27 128 IPR003245 GO:0009055
Cma02g00095 228 Pfam Plastocyanin-like domain 37 120 IPR003245 GO:0009055
Cma02g00095 228 MobiDBLite consensus disorder prediction 135 205 - -
Cma02g00095 228 SUPERFAMILY Cupredoxins 26 127 IPR008972 -
Cma02g00095 228 Gene3D - 26 130 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00095 - - - bhj:120089248 216.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00095 Cma-Chr2:485515 Cma09g00857 Cma-Chr9:4202759 1.40E-47 dispersed
Cma06g00591 Cma-Chr6:2844950 Cma02g00095 Cma-Chr2:485515 2.03E-21 dispersed
Cma02g00095 Cma-Chr2:485515 Cma04g00944 Cma-Chr4:4849942 4.70E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g283 Blo02g00069 . Bda06g00300 . . . . . . . Cma02g00095 . Car02g00081 . . . . . . . . . . . Cla02g01737 Cam02g1829 Cec02g1851 Cco02g1894 Clacu02g1809 Cmu02g1757 Cre02g2081 . . . Cone12ag1470 Lsi10g01609 . Chy11g01127 . . . . . Bpe14g00646 Bpe07g00545 Bma02g01382 Bma12g00729 Sed01g0171 Cmo02g00095 . . . . . . Cpe05g01502 Bhi10g01119 Tan05g0755 Cmetu11g0979 . Hepe08g0550 . . . . . . . . . . Csa06g01085 . Cme11g01216
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma02g00095 . 24 145 Phytocyanin Superfamily AT4G28365 54.9 5.4e-37 151.8
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma12g00366 CCT 9 165 Phytocyanin Superfamily AT5G25090 57.1 1.1e-39 160.6
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma20g00126 . 52 259 Phytocyanin Superfamily AT1G08500 52.4 1.7e-50 196.8
Cma10g00972 . 32 172 Phytocyanin Superfamily AT2G27035 53.9 2.3e-41 166.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002701 2 2 1 2 4 1 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00095 Cma_Chr02 FPKM 1.475533 0.0 0.0 0.0 0.455404 0.0 0.0 0.0 0.0 0.0